Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07350 177 / 6e-56 Protein of unknown function (DUF506) (.1) AT3G25240 150 / 1e-45 Protein of unknown function (DUF506) (.1) AT1G12030 138 / 1e-40 Protein of unknown function (DUF506) (.1) AT1G62420 125 / 1e-35 Protein of unknown function (DUF506) (.1) AT4G14620 122 / 6e-34 Protein of unknown function (DUF506) (.1) AT2G39650 119 / 1e-33 Protein of unknown function (DUF506) (.1) AT3G22970 115 / 5e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 112 / 1e-30 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 103 / 4e-27 Protein of unknown function (DUF506) (.1) AT3G54550 102 / 6e-27 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003174 [exp] 304 / 9e-106 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10035594 [exp] 144 / 1e-42 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1) Lus10003258 [exp] 144 / 2e-42 AT1G62420 179 / 2e-54 Protein of unknown function (DUF506) (.1) Lus10024840 [exp] 131 / 4e-37 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 130 / 9e-37 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 127 / 1e-35 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 125 / 5e-35 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 121 / 6e-33 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 120 / 1e-32 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184700 [exp] 197 / 6e-64 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.009G144600 [exp] 179 / 6e-57 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1) Potri.004G001400 [exp] 139 / 8e-41 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.011G023301 [exp] 128 / 1e-36 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 121 / 2e-33 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 121 / 3e-33 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 120 / 7e-33 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 116 / 1e-32 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 114 / 6e-32 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G203700 [exp] 115 / 1e-31 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10002335 pacid=23179510 polypeptide=Lus10002335 locus=Lus10002335.g ID=Lus10002335.BGIv1.0 annot-version=v1.0 ATGTCGTACTTGAGAGAATCGGGGCGCAATGCGGGGATCTGCAAGACGCGGTGGGACTCAACGGGAGGGCTGACATCGGGAAGCTACGAATTCATCGATG TATTGGTATCCAACAACCACCGCTACATAGTGGATCTGGAATTCGCGTCGCAGTTCGAGATCGCGAGGCCGACTGCACAGTACCAGAGGCTGATGGAGTC GCTACCGAAGGTCTTCGTCGGGAGCGTTGAGGATCTGAAGAGGATCGTGAGGACGATGAGCGACTCCGCGAGGAAGTCGCTGAAGTCGAGAGAGCTGTCT CTGCCTCCGTGGAGGAAGAATCAGTACATGATCAACAAGTGGCTCGGGCCATACAGGCGGACGGTCAATTCCGCGCCGGAGAGGTCGTTTCCGGCGGTGA TCAGTCAGGTGGTTGGTGAGCAATGCAGATTCGTTGGGTTTGGCGTCGGCGACGTTGGTAGCCGGCGAGCTGCTCGTACTTGA
AA sequence Show only first row Show all	>Lus10002335 pacid=23179510 polypeptide=Lus10002335 locus=Lus10002335.g ID=Lus10002335.BGIv1.0 annot-version=v1.0 MSYLRESGRNAGICKTRWDSTGGLTSGSYEFIDVLVSNNHRYIVDLEFASQFEIARPTAQYQRLMESLPKVFVGSVEDLKRIVRTMSDSARKSLKSRELS LPPWRKNQYMINKWLGPYRRTVNSAPERSFPAVISQVVGEQCRFVGFGVGDVGSRRAART

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	1.7	0.9466
AT1G75810			unknown protein		Lus10034536 [exp]	2.0	0.9330
					Lus10028391 [exp]	7.1	0.9090
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	8.8	0.9216
AT3G07350			Protein of unknown function (D...		Lus10003174 [exp]	12.0	0.8467
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	14.1	0.9188
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	14.7	0.8766
AT4G21920			unknown protein		Lus10001143 [exp]	17.5	0.9212
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10003785 [exp]	18.0	0.8424
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	19.2	0.8837

Compare expression of checked genes

Lus10002335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.