Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48560 249 / 1e-77 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 232 / 2e-71 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 178 / 1e-50 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 167 / 8e-48 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 156 / 8e-44 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT4G34530 155 / 2e-43 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G59640 152 / 4e-43 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 150 / 3e-42 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 147 / 3e-40 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G62610 143 / 1e-39 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003172 [exp] 444 / 6e-156 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013052 [exp] 176 / 7e-50 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 175 / 2e-49 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041261 [exp] 158 / 3e-45 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021968 [exp] 158 / 4e-45 AT3G23690 163 / 5e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 158 / 9e-45 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 157 / 3e-44 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10030807 [exp] 155 / 3e-44 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013284 [exp] 155 / 3e-44 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248500 [exp] 288 / 9e-92 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 213 / 3e-63 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 202 / 5e-59 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G117300 [exp] 163 / 2e-45 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G136100 [exp] 164 / 5e-45 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G156000 [exp] 162 / 5e-45 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.008G113200 [exp] 163 / 1e-44 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.010G040000 [exp] 151 / 3e-43 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 150 / 3e-42 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.015G104200 [exp] 151 / 1e-41 AT5G50915 163 / 9e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002337 pacid=23179516 polypeptide=Lus10002337 locus=Lus10002337.g ID=Lus10002337.BGIv1.0 annot-version=v1.0 ATGTCCAAGGTTCAAATTTTCATCAATGGAGGGCGAATTCTTCCTCAACGCATCTCTGCCCCAGCCACTCCCTCTGCATTTCGACCCACTCACTTCCAAT TTCGCCGACCACCACCAATTCGGCAACTGGGAAAGGTCAACGGCAGCGGATCACAACGCCGGCCTCCAGTTCGAATCGGCGCTGAGCTCCATGGCTTCCT CTCCGGCCGCGGCAGCGGCGACACCCCGCCGCTGATGGGGATGAATTCCGCCACCACGGTGGCAGACTTCAGCGCTGATCCCGGGTTTGCCGAGAGGGCT GCGAGATTCTCCTGCTTCGGCAGCCGGAGCTTCAACGGCAGGGCTTGTCAAACCGGGCTCCACCATCAACTCCCGCCGTCGATGAACGGCTGCGGCAGCA AACTGCCGCGTGTCTCGAGCAGCCCTTCTCTTAAAGTGCTCGGATCTCAAAAGGGGAACAAAGGAGGCTCTCCTTCTCCTTCTCCGCTTGCTGAATTGGG TAATTCTTCTCCTTCCCCTGAAGAATCCTCCTTGTCGGAGCACCGGATTCCCATCTCCGCCGCTGACCCCAATCCCAAGAAAAGAAAATCAGCTCCCAAG GGTAAATCCGTCAGTCAAGCCAATGCCGCCACCACTAAGGAAACTGAAGCTCAGGAGAACCCAAATGCGAAGCGGAGCAAGGGAAACGGGAACCACGACG GCGGAGAAGAGAAACAGAGCAACAAGGCCAATTCGAAGGCGGCTGCGGCCGCAAAAGCGGCTGAAGAGGCCCCGAAGGACTATATCCATGTAAGGGCAAG AAGAGGGCAAGCAACTGACAGTCACAGTCTAGCTGAAAGAGTTCGACGGGAGAAAATCAGCGAACGAATGAAGTTTCTTCAGGATCTTGTTCCTGGCTGC AATAAGGTGACAGGGAAAGCTCTGATGCTCGATGAAATAATAAACTACGTGCAGTCATTGCAACGGCAAGTTGAGTTTTTATCCATGAAGATGGCATCCG TTAACACCACCAGGCTGGATTTCAACTTGGACTCTCTCCCTTCCAAAGACCGGCAGCGGCAGCTCTGCCACAGCAGCAGCAGCGNCTCTGCCACAGCAGC AGCAGCGGCGCAGTTTGACCAGAATATCCTCAGCCTCCATAGCCAATTACCATCTCTTGATTCTTTCCACCATGACCAGTTCCAGACATTCTGTGACGAG GACCTTCAGAGCATTGTTCAGATGGCGACTAACATGCCGGAGGCAGCTTACTTAGGTTTTTCATTTCAGCTTCATCATTGA
AA sequence Show only first row Show all	>Lus10002337 pacid=23179516 polypeptide=Lus10002337 locus=Lus10002337.g ID=Lus10002337.BGIv1.0 annot-version=v1.0 MSKVQIFINGGRILPQRISAPATPSAFRPTHFQFRRPPPIRQLGKVNGSGSQRRPPVRIGAELHGFLSGRGSGDTPPLMGMNSATTVADFSADPGFAERA ARFSCFGSRSFNGRACQTGLHHQLPPSMNGCGSKLPRVSSSPSLKVLGSQKGNKGGSPSPSPLAELGNSSPSPEESSLSEHRIPISAADPNPKKRKSAPK GKSVSQANAATTKETEAQENPNAKRSKGNGNHDGGEEKQSNKANSKAAAAAKAAEEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGC NKVTGKALMLDEIINYVQSLQRQVEFLSMKMASVNTTRLDFNLDSLPSKDRQRQLCHSSSSXSATAAAAAQFDQNILSLHSQLPSLDSFHHDQFQTFCDE DLQSIVQMATNMPEAAYLGFSFQLHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030819 [exp]	2.0	0.9009
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	2.4	0.9036
					Lus10019700 [exp]	2.8	0.8664
AT5G47540			Mo25 family protein (.1)		Lus10039045 [exp]	7.9	0.8246
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	9.2	0.8659
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	10.6	0.8478
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	12.8	0.8664
AT4G21215			unknown protein		Lus10006757 [exp]	13.2	0.8317
AT4G08960			phosphotyrosyl phosphatase act...		Lus10040491 [exp]	14.3	0.8577
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	16.9	0.8386

Compare expression of checked genes

Lus10002337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.