Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48570 778 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 778 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G59240 289 / 2e-92 Ribosomal protein S8e family protein (.1) AT5G20290 276 / 2e-87 Ribosomal protein S8e family protein (.1) AT3G54010 175 / 5e-46 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 116 / 9e-30 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48580 107 / 6e-27 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 100 / 1e-24 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G55520 95 / 4e-22 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G21640 87 / 6e-18 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003171 [exp] 1273 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 846 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 845 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025887 [exp] 301 / 2e-96 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10016587 [exp] 253 / 9e-78 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 227 / 5e-69 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1) Lus10022603 [exp] 163 / 4e-42 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 150 / 1e-37 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10003170 [exp] 106 / 2e-26 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 812 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 748 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 538 / 0 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 513 / 2e-173 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G360500 [exp] 302 / 4e-97 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1) Potri.017G110000 [exp] 301 / 6e-97 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 299 / 4e-96 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 289 / 3e-92 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.016G105100 [exp] 182 / 1e-48 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.002G248200 [exp] 104 / 7e-26 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0487 [flax] [poplar] PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10002338 pacid=23179507 polypeptide=Lus10002338 locus=Lus10002338.g ID=Lus10002338.BGIv1.0 annot-version=v1.0 ATGGAGCCGGATTTCGATTTCCCGACCGCCGGCGATGACCTCATGGACGAGGACTTCGATTTGGGCGGCGGCGATGATGTGGCCCCCGTCGTTCTCAAAG TCGGCGAGGAGAAGGAGATCGGGAAGGAAGGGCTGAAGAAGAAGCTCCTCAAGGAAGGCGAAGGCTGGGACACTCCCGATAGCGGCGATGAGGTTGAAGT TCATTACACGGGGACGTTGCTTGACGGGAGCAAGTTTGATTCCAGCCGCGATCGTGGGACGCCGTTCAAATTCACGCTAGGTCAAGGTCAAGTGATTAAA GGATGGGACCAGGGTATCAAGACGATGAAGAAGGGTGAAAATGCTGTTTTCACCATTCCTCCTGAGTTGGCTTATGGTGCTTCTGGCTCACCACCAACTA TTCCACCGAATGCAACCCTTCAGTTTGATGTCGAACTGCTATCTTGGACTAGCGTGAAGGACATCTGCAAGGATGGTGGGATATTCAAGAAGGTTGTTGT GGAAGGAGAGAAATGGGAGAACCCGAAGGACCTTGATGAAGTTTTTGTGAAGTATGAAGTCCAGCTGGTGGAGGATGGCACTGTTGTTGCCAAGTCGGAT GGTATAGAATTTACAGTCCAGGAGGGCCATTTCTGTCCTGCGCTGTCTAAGGCTGTGAAGACGATGAAGAAAGGGGAAAAAGTCTTCCTGACAGTGAAGC CTCAATATGGATTTGGAGAAACTGGGAAGCCTGCATCTGCTGATGGTCCAGCTGTTCCAGCTAATGCCACATTGCAGGTAAGCCTCGAATTAGTTTCATG GAAGACTGTTACTTCAGTAACTGATGACAAGAAGGTCATCAAGAAAATCCTGAAGGAAGGCGAGGGATATGAAAAGCCAAATGATGGCGCCGTTGTTCAA TTGAAACTGATTGGAAAGTTGCAAGATGGGACAGTGTTCTTGAAGAAAGGTCACGATGATAATGACGAACTGTTTGAGTTCAGAACTGATGAAGAGCAAG TAATCGACGGTCTGGACAGAGCTGTGATGACAATGAAGAAAGGTGAGGTGGCTCTCCTCACCATCGCACCAGAGTACGCATTCGGGTCATCCAAATCACA ACAGGAGATGGCTGTTGTCCCTCCGAACTCGACAGTTCACTACGAAGTCGAATTGGTATCCTTCGTCAAGGAGAAGCAATCCTGGGACATGAACACACAG GAAAAAATCGAAGCTGCAGGAAAGAAGAAGGAAGAAGGAAACTTGAAGTTCAAGGCAGGAAAATACTCGAAGGCATCCAAAAGATACGAGAAGGCAGTGA AATACATAGACTACGACACTTCCTTCACCGAAGAAGAGAAGAAGCAGTCCAAGGCTTTGAAGGTGGCGTGTAACCTAAACAACGCCGCTTGCAAGCTGAA ACTGAAGGAGTACAAAGCGGCGGAGAAGCTATGCACCAAGGTGCTGGAAATGGACAGCATGAACGTCAAAGCACTGTACAGAAGGGCGCAAGCTTACATC CAGCTGGCAGATCTCGAGCTGGCGGAATTCGACATCAAGAAGGCGCTGGAGATCGATCCGGAGAACAGGGAGGTGAAGGCGGAGTACAGGGTGTTGAAGG AGAAGAAGAGGGAGTACAATAAGAAGGATGCCAAGTTCTACGGGAACATGTTCGCCAAGATGTTGGATTCTACAGTAAGATCGAGAGAGGTTGAGAGAGC AGTCTCAGTTCGCCGTCGCTCAGCCAACATGGGTACTCCTCTCTTTCACGCCGATTTCCCCCATCTCTACCATCTAAACCTTTCATGTATTCAAAGCTTC TCAATCGATACGTATGCTAATCGACTTTCAAACTTTGAAATCGCAGGTATTTCCAGGGACTCTCTGCACAAGAGGCGCGCCACCGGAGGCAAGAAGAAGG TCTGGAGGAAGAAGCGAAAGTATGAGCTCGGACGTCAGCCAGCCAACACCAAGCTCTCGAGCAACAAGACAGTGAGGAGGGTGCGTGTCAGAGGTGGCAA TGTGAAGTGGAGGGCTCTGAGGTTGGATACCGGTAGCTTCTCTTGGGGAAGTGAGGCTGTATCTATGAAATGCCGTCTTCTTGATGTGGTGTACAATGCC TCCAACAATGAGCTTGTGAGGACTCAGACTTTGGTCAAGAGTGCCATCGTCCAAGTTGATGCTGCCCCATTCAGGCAGTACTACCTTAACCACTATGGTG TTGAGGTTGGTAGGAAGAAGAAGGCTGTGGCTAAGACTGCTGAGGAGGGAGATGCTGCTACCGCTCCTGCAGCTGAAGAAACCAAGAAGAGCAAGCATGT CCTGAGGAAGATTGAATCCCGCCAGAAGGATCGCCAGCTTGACCCCCACATCGAGGAGCAGTTCAGTGGTGGTAGGCTGTTGGCTTGCATTTCATCCCGA CCTGGTCAATGCGGTAGAGCTGATGGATACATATTGGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGCAAGGGTGCTGGTG CTGCTTAG
AA sequence Show only first row Show all	>Lus10002338 pacid=23179507 polypeptide=Lus10002338 locus=Lus10002338.g ID=Lus10002338.BGIv1.0 annot-version=v1.0 MEPDFDFPTAGDDLMDEDFDLGGGDDVAPVVLKVGEEKEIGKEGLKKKLLKEGEGWDTPDSGDEVEVHYTGTLLDGSKFDSSRDRGTPFKFTLGQGQVIK GWDQGIKTMKKGENAVFTIPPELAYGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKVVVEGEKWENPKDLDEVFVKYEVQLVEDGTVVAKSD GIEFTVQEGHFCPALSKAVKTMKKGEKVFLTVKPQYGFGETGKPASADGPAVPANATLQVSLELVSWKTVTSVTDDKKVIKKILKEGEGYEKPNDGAVVQ LKLIGKLQDGTVFLKKGHDDNDELFEFRTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSKSQQEMAVVPPNSTVHYEVELVSFVKEKQSWDMNTQ EKIEAAGKKKEEGNLKFKAGKYSKASKRYEKAVKYIDYDTSFTEEEKKQSKALKVACNLNNAACKLKLKEYKAAEKLCTKVLEMDSMNVKALYRRAQAYI QLADLELAEFDIKKALEIDPENREVKAEYRVLKEKKREYNKKDAKFYGNMFAKMLDSTVRSREVERAVSVRRRSANMGTPLFHADFPHLYHLNLSCIQSF SIDTYANRLSNFEIAGISRDSLHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGSFSWGSEAVSMKCRLLDVVYNA SNNELVRTQTLVKSAIVQVDAAPFRQYYLNHYGVEVGRKKKAVAKTAEEGDAATAPAAEETKKSKHVLRKIESRQKDRQLDPHIEEQFSGGRLLACISSR PGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	0	1
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	1.0	0.9547
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	1.7	0.9350
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	2.0	0.9463
AT1G09590			Translation protein SH3-like f...		Lus10016241 [exp]	5.5	0.8932
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	5.9	0.8923
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	7.4	0.8943
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	9.5	0.8792
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	10.2	0.9068
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	10.6	0.8772
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10043322 [exp]	10.8	0.8262

Compare expression of checked genes

Lus10002338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.