Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03200 1102 / 0 catalytics (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003165 [exp] 1447 / 0 AT4G03200 1110 / 0.0 catalytics (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209900 [exp] 1132 / 0 AT4G03200 1088 / 0.0 catalytics (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03190 [flax] [poplar] Thioredox_DsbH Protein of unknown function, DUF255
Representative CDS sequence Show only first row Show all	>Lus10002341 pacid=23179508 polypeptide=Lus10002341 locus=Lus10002341.g ID=Lus10002341.BGIv1.0 annot-version=v1.0 ATGGCGTCTGATCCACCTACCGAAGGAAGAAACCCCTCCACTTCCACAACCACCGCCGCCCACTCCAACCGCCTCGCAGCTGAGCACAGCCCTTACCTCC TTCAGCATGCTCATAACCCGGTTAATTGGTATCCATGGGGCGAAGAAGCTTTCGCTGAAGCCAGGAGAAGAGACATTCCTATCTTCCTTTCAATCGGATA CAGCACATGCCATTGGTGTCATGTGATGGAGGTAGAGTCCTTTGAGGACGAGGTAGCTGCAAAATTGCTAAATGACTGGTTTGTCAGCATCAAGGTGGAT AGGGAGGAGCGACCCGATGTTGACAAGGCTAGAACTCAGTCTGGATGGCCACTATCAGTGTTCCTTGCACCTGACTTGAAACCTTTGATGGGTGGCACTT ACTTCCCCCCTGATGATAAGTATGGTAGACCTGGGTTCAAGACAGTACTTAGAAAGGTGAAGGATGCTTGGGATACTAAGAGGGAAATGCTCCTTCAAAG TGGAACCTTTGCTCTCGAGCAGCTCTCAGAAGCTTTAACAGCTGTTGCTACTTCAACTACGCTGAGTGATGGAGTTCCTCAAAATGCAATACCCCTTTGT GCAGAGCAGCTTTCTCAAAGCTACGATCCGCAGTATGGCGGGTTTGGTTCTGCTCCAAAGTTTCCTCGACCGGTGGAGATTCAGCTGATGCTTTATAACT TCAAGAAGTTGGAGGATTCTGGGAAAGTGGTTGAAGCAGAGGACAATAGGAAGAAGGCATTGTTCAGCTTGCAGTGCATGGCGAAAGGTGGCATCCATGA TCACGTTGGAGGTGGCTTCCACAGATACAGTGTGGATGAACGTTGGCACGTTCCTCATTTTGAGAAGATGTTATATGACCAAGGCCAACTTGCTAATGTG TATTTGGACGCCTTCACTGTTACAAAGGACGTATTTTATGCACGTATTTGTCGGGACATCCTCGATTATCTGAGGAGAGACATGATCGGAGCAGAAGGTG AAATCTTTTCAGCAGAAGATGCTGATAGTGCTGTGCATGAAGGCGCTAAAGTGAAGAAAGAAGGAGCTTTCTACATCTGGACCAGCAAAGAGGTTGACGA TGTCCTTGGAGAACATGCAAGCCTCTTTAAAGATCATTACTACGTAAAGCCTTCCGGAAACTGTGACCTCTCTCGAAAGAGCGATCCCCACAATGAGTTC AAGGGGCAAAATGTACTCATTGAGTTGAAAGATGGTCGGGATTTAGCATCGAAATATGACATGCCTATGGATAAATATCAAGAGATTCTGGGCGAATGCA AGCAGAAGCTATTTGAAATTAGATCAAGACGACCGAAGCCACATTTAGATGACAAGGTTATTGTCTCATGGAACGGCCTTGTAATCTCAGCATTTGCAAG AGCTTCTAAAATTCTAAAGCATGAAAGTCCGAGTACAAGTTACAACTTCCCTCTTACTGGCTGCGATCCAAAGGAATACTTAGAGGTTGCAGAAAAGGCC GCATCTTTTATCAGAAAGAACCTCTACAATGAACAAACTCGTAGACTCGAGCACAGTTTTAGAAAGGGCCCATCGAAAGCGCCTGGATTTTTAGATGATT ATGCCTTTCTGATTTCCGGGTTGTTGGATCTTTACGAGTGCGGTGGTCAGACCTGTTTTCTTGTTTGGGCCACTGAACTGCAGAAAACTCAGGACGAGCT GTTCTTGGACAGAATAGGAGGTGGCTACTTCAATACGGCAGGGGAGGATCCTTCAGTCTTGCTTCGAGTGAAGGAAGATCACGACGGGGCAGAGCCCTCG GGGAACTCAGTCTCAGCGATAAATCTCGTAAGGTTGGCATCGATGACATCGGGAAATAAATCCAAGCATTACAGGCAGAATGCGGAGCATTTGTTGTCGG TTTTCGAGACACGGTTAAAAGACATGGCTGTGGCAGTACCCTTGATGTGTTGTGCGGCAGATATGGCCTTGGGCAGTCATCAGAAACAAATTGTGGTCGT AGGCAGGAAACATTCTGGGGAATTCGACAGCATGCTTGCTGCTGCTCATGCATCATTCAACCCCAATAAAATCGTGGTTCATGTTGATCCTTCCGACGAT GATGAAATGAGAATGTGGGAAGAAAACCACAACAACATTGCACAAATGGCGAAGAACAATAATGTTTCAGATGATAAAGTGGTGGCTCTCGTCTGTCAAA ACTTCACTTGCAGTCCTCCGGTTGCCGATCCTAGATCTCTGGAAACCTTGTTGTCCAAGAAACCAGCATGA
AA sequence Show only first row Show all	>Lus10002341 pacid=23179508 polypeptide=Lus10002341 locus=Lus10002341.g ID=Lus10002341.BGIv1.0 annot-version=v1.0 MASDPPTEGRNPSTSTTTAAHSNRLAAEHSPYLLQHAHNPVNWYPWGEEAFAEARRRDIPIFLSIGYSTCHWCHVMEVESFEDEVAAKLLNDWFVSIKVD REERPDVDKARTQSGWPLSVFLAPDLKPLMGGTYFPPDDKYGRPGFKTVLRKVKDAWDTKREMLLQSGTFALEQLSEALTAVATSTTLSDGVPQNAIPLC AEQLSQSYDPQYGGFGSAPKFPRPVEIQLMLYNFKKLEDSGKVVEAEDNRKKALFSLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANV YLDAFTVTKDVFYARICRDILDYLRRDMIGAEGEIFSAEDADSAVHEGAKVKKEGAFYIWTSKEVDDVLGEHASLFKDHYYVKPSGNCDLSRKSDPHNEF KGQNVLIELKDGRDLASKYDMPMDKYQEILGECKQKLFEIRSRRPKPHLDDKVIVSWNGLVISAFARASKILKHESPSTSYNFPLTGCDPKEYLEVAEKA ASFIRKNLYNEQTRRLEHSFRKGPSKAPGFLDDYAFLISGLLDLYECGGQTCFLVWATELQKTQDELFLDRIGGGYFNTAGEDPSVLLRVKEDHDGAEPS GNSVSAINLVRLASMTSGNKSKHYRQNAEHLLSVFETRLKDMAVAVPLMCCAADMALGSHQKQIVVVGRKHSGEFDSMLAAAHASFNPNKIVVHVDPSDD DEMRMWEENHNNIAQMAKNNNVSDDKVVALVCQNFTCSPPVADPRSLETLLSKKPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	0	1
AT2G40070			unknown protein		Lus10035528 [exp]	4.9	0.8567
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	8.3	0.8826
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	10.2	0.8474
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	17.0	0.8651
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	18.9	0.8775
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	22.4	0.8766
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	22.8	0.8647
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	24.7	0.8455
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	25.4	0.8569
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	26.5	0.7443

Compare expression of checked genes

Lus10002341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.