Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07310 326 / 5e-110 Protein of unknown function (DUF760) (.1) AT5G48590 307 / 8e-103 Protein of unknown function (DUF760) (.1) AT1G48450 174 / 1e-50 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT1G32160 164 / 1e-46 Protein of unknown function (DUF760) (.1) AT3G17800 163 / 3e-46 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003162 [exp] 618 / 0 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 414 / 9e-145 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 399 / 6e-138 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 385 / 2e-132 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 178 / 8e-52 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10035392 [exp] 175 / 8e-51 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10041984 [exp] 173 / 6e-50 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10030993 [exp] 164 / 1e-46 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 133 / 8e-37 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247700 [exp] 362 / 2e-123 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1) Potri.003G097400 [exp] 183 / 6e-54 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 174 / 3e-50 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 172 / 6e-50 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10002343 pacid=23179500 polypeptide=Lus10002343 locus=Lus10002343.g ID=Lus10002343.BGIv1.0 annot-version=v1.0 ATGGAATCCTCCCTTTCCAATCACGCAACCCTCTCCTCCTCCCTCTCCCTTTCTCGTTGTCGCTTGTCCGGTCAGGGAACCAGGGGAATTGCTTCTTTCG TTCCTTACCGGAAGGTTTCGCCGGCGGTGAGCTTCGTGGCTCGAGCTGGATCGTCGTCGAGCCACTGTGAACCCAGCAGCAGCAGTAACACCGGCTTGAA CATTCCGATCGAGCCACGCTCGCCCACTGGGAAGTTCCTTAAGGACATGTTCCAGAACCAGAGGCCGCTGTTTCACGTCGCCGTAGGCGAGGAATTGAAG CTTTTGGCCGGCGAGAGGGATGCTGCTCTGGTTCGGCTGTCTCTCCCCTCTGACTCCCACGAAGCTGTCCTTCACAGGAGGATTGCAGAACTGAAAGAAT ATGAATGCCAAGTAGCAGCAGAAGATGTAATGTACATGCTAATACTCCACAAATTCACCGAAATCCGGGTTCCATTAGTTCCCAAGTTCTCGAAATGCAT TCACAACGGCAGGCTAGAGATCCTCCCAGCAAAAGACTACGAGCTAGAATCGATCCACGCACCAGACGTCTTAGAAATGATCAAGGAACACGTCTCCACA ACAATAGGCCTAAGATCAGATTCCACCAGCATCAAAGATTCCTGCGAAACGACCGAGATCCACAGGTCCGAAATGGGACAAATGTACTTTTCCTCCATCT TGTACGGTTACTTCCTCAAGTCCGCCTCGGTGAGGCATGGCTTGGAACTGTGTCTAGGCGAGCCTGAACCCCAGCATCACCTCGTTCGACGTTCGAGGCT TAGGCGTTGTAACCTTGTGCTTGATCGTGCGAACGAGTTACAAGGATCGATGCGTTCTGGTGTTAGTTTGAGGTCGTATGTGATGGGGTTTGATGCTGAG TCGTTGCAGAGGTGTGCGAGGTTGAGGTCCGAGGAGGCGATGAGTTTGATTGAGAGGCAGTGCTGTGGGGTTTTCGGGGATGGTGATGAGGAGGAGAGTA TTGTGGCTTCGTTTTCGAGCTTGAGGAGATTGGTGTTGGAAGCTGCTGCTTTTGGTAGGTTTCTATGGGACTCTGAAGAGTATGTTGACTCTGTGTTTAA GCTTACGTGA
AA sequence Show only first row Show all	>Lus10002343 pacid=23179500 polypeptide=Lus10002343 locus=Lus10002343.g ID=Lus10002343.BGIv1.0 annot-version=v1.0 MESSLSNHATLSSSLSLSRCRLSGQGTRGIASFVPYRKVSPAVSFVARAGSSSSHCEPSSSSNTGLNIPIEPRSPTGKFLKDMFQNQRPLFHVAVGEELK LLAGERDAALVRLSLPSDSHEAVLHRRIAELKEYECQVAAEDVMYMLILHKFTEIRVPLVPKFSKCIHNGRLEILPAKDYELESIHAPDVLEMIKEHVST TIGLRSDSTSIKDSCETTEIHRSEMGQMYFSSILYGYFLKSASVRHGLELCLGEPEPQHHLVRRSRLRRCNLVLDRANELQGSMRSGVSLRSYVMGFDAE SLQRCARLRSEEAMSLIERQCCGVFGDGDEEESIVASFSSLRRLVLEAAAFGRFLWDSEEYVDSVFKLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	1.0	0.9987
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	1.4	0.9965
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	1.7	0.9963
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	2.0	0.9961
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	3.5	0.9947
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	3.5	0.9937
					Lus10032178 [exp]	3.9	0.9950
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	4.2	0.9941
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	5.9	0.9947
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	6.9	0.9924

Compare expression of checked genes

Lus10002343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.