Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24910 192 / 5e-59 Protein of unknown function (DUF579) (.1) AT1G71690 129 / 7e-35 Protein of unknown function (DUF579) (.1) AT2G15440 120 / 2e-31 Protein of unknown function (DUF579) (.1) AT1G09610 119 / 2e-31 Protein of unknown function (DUF579) (.1) AT1G67330 119 / 3e-31 Protein of unknown function (DUF579) (.1) AT1G27930 118 / 4e-31 Protein of unknown function (DUF579) (.1) AT3G50220 117 / 2e-30 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT1G33800 113 / 5e-29 Protein of unknown function (DUF579) (.1) AT5G67210 112 / 1e-28 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT4G09990 111 / 2e-28 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003160 [exp] 454 / 6e-162 AT4G24910 236 / 3e-76 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 131 / 9e-36 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 130 / 1e-35 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 125 / 7e-34 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 125 / 2e-33 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 119 / 3e-31 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 118 / 1e-30 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 116 / 3e-30 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 116 / 4e-30 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096900 [exp] 263 / 9e-87 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 134 / 6e-37 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 129 / 3e-35 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 118 / 6e-31 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 115 / 5e-30 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 115 / 2e-29 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 114 / 4e-29 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 113 / 6e-29 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 110 / 6e-28 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 97 / 8e-23 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10002345 pacid=23179497 polypeptide=Lus10002345 locus=Lus10002345.g ID=Lus10002345.BGIv1.0 annot-version=v1.0 ATGCCATCAGAATTGTTCCATTTTCGTTCATTAGTAATCCCTCTTCTCAAATTTTCTTCTCCTGAACTTTCAGATCAACTTAACCATTCATCTAGCTCCC GCAGCAAGAACTTTAGAGGAGCAGCTTATAAAAGCATGATCAAATTCCCAGCAAGGAAGCTTCTGCCACTCCTTGTGTTTACCCTCTCCAGCTTTTCCAT CTTCAGACTCCTCAGGATTGCAGTCACCACTTCTTCTTCTCCATCACCATCTTCCACCTCTCCTCCATTGCTTTCTCTGCATCCAGCTCTTCAGAACTCC TCTTCTTCTACTATTCAACGAAACAGCGAAAGATTCCGTCTTTCGAAGAAGGAATTCAAGTTGCTGTCGAATCTGGTCAAAAGCAAATCTCCTTGCAACC TGCTAATTTTCGGCCTGGGAAACCAGCACCTGAAGCTCTCATCCCTCAACTCAGGAGGCAAAACTCTGTTCTTGGAGGATGATTCCAACAAAATAAACAA GTTCCAACGAAAAATCAAGGGAACAACATCATCGATCTACAGAGTTGACTACCCGATTCCTGCGGAGAAGGCCTACGAGCTTCTGAAGCATGCCAGGGAG AATCCAGAATGTAGACCATCAGTCATGAATTCAACATCTTGCAAGCTGTCATTGACGAATCTTCCTCGACAAGTATACGAGGGAGACAGATGGGACGTGG TGGTGGTGGACGGGCCGAGTGGGGACTCACCGGAGGCGCCAGGGAGGATGTCTGCAATCTACACGGCGGGGGTGATTGCAAGAAGAGGCGGAAGTAGTAG TGGTAGTCGGACGACACGTGTGGTGATGCACGACGTTTATCGGACGATCGAGAAGTGGTTCTCTTGGGAGTTTTTATGTGAAGAGAATTTGGTGTCTTCG AAAGGTCGACTGTGGAGTTTCGAAATCGGAGGCGAATTAGCAGATTCTGAAAGGTTTTGTGCTCATCATCGCGCAGTTCGTTAA
AA sequence Show only first row Show all	>Lus10002345 pacid=23179497 polypeptide=Lus10002345 locus=Lus10002345.g ID=Lus10002345.BGIv1.0 annot-version=v1.0 MPSELFHFRSLVIPLLKFSSPELSDQLNHSSSSRSKNFRGAAYKSMIKFPARKLLPLLVFTLSSFSIFRLLRIAVTTSSSPSPSSTSPPLLSLHPALQNS SSSTIQRNSERFRLSKKEFKLLSNLVKSKSPCNLLIFGLGNQHLKLSSLNSGGKTLFLEDDSNKINKFQRKIKGTTSSIYRVDYPIPAEKAYELLKHARE NPECRPSVMNSTSCKLSLTNLPRQVYEGDRWDVVVVDGPSGDSPEAPGRMSAIYTAGVIARRGGSSSGSRTTRVVMHDVYRTIEKWFSWEFLCEENLVSS KGRLWSFEIGGELADSERFCAHHRAVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	0	1
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	1.0	0.9951
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	2.0	0.9867
					Lus10041251 [exp]	2.4	0.9794
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	4.9	0.9696
AT3G25590			unknown protein		Lus10034409 [exp]	4.9	0.9498
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	5.1	0.9626
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	5.3	0.9668
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	6.3	0.9643
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	6.7	0.9593
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	6.8	0.9510

Compare expression of checked genes

Lus10002345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.