Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 214 / 2e-69 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 61 / 5e-11 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 54 / 1e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 41 / 0.0003 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G61510 40 / 0.0005 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 39 / 0.0009 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003159 [exp] 295 / 8e-100 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 259 / 7e-87 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 256 / 8e-86 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 207 / 6e-66 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 206 / 7e-66 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 205 / 1e-65 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 199 / 4e-63 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 71 / 4e-14 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 69 / 9e-14 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342800 [exp] 222 / 3e-72 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 222 / 3e-72 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 219 / 4e-71 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 214 / 3e-70 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 211 / 3e-68 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 67 / 3e-13 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 54 / 2e-08 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.008G161600 [exp] 53 / 2e-08 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 43 / 6e-05 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.009G103000 [exp] 41 / 0.0004 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10002346 pacid=23179513 polypeptide=Lus10002346 locus=Lus10002346.g ID=Lus10002346.BGIv1.0 annot-version=v1.0 ATGCCGGAAAAGAAGTTGATGCACGCGCTCCGGTACGATCGATACGGCGGTGGACCCGCCGGTTTGAAGCATGTTGAAGTTCCAGTCCCTGTGGCGAAGA AAGGCGAGGTTTTGGTGAAGGTGGAAGCCGTCAGTCTTAATCCAGTGGATTGGAAGATTCAGAAGGGAATGCTCAGACCTATTCTCCCTTTCAGGTTTCC TCATATCCCCGGTAGTGATGTTGCTGGTGAGGTGGTGGAGGTTGGACCAGGTGTGAAGAAGTTCAGCCCTGGTGATAAAGTTGTAGGCATGGTCAATCAT TTTACTGGAGGAGGACTAGCTGAGTATGCAGTATTCAAGGAGTCCATAACAGTCAAGAGACCAGCAGAAGTTTCGGCAGCTGAAGCCGCAGGACTCCCCG TTGCTGCTCTGACAGCACACCAAGCTCTCACACAAGCTGCCGGAATCAAGCTCGACGGAAGTGGCCCCGCGAAGAACATCCTGATCACTGCGGGATCAGG CGGTGTAGGACACTACGCAATCCAGCTGGCGAAACTCGCCGCCAACGTCCACATCACCGCGACATGTGGCGCGCGAAACATCCAGCTCGGCTCGAGCTGG TGA
AA sequence Show only first row Show all	>Lus10002346 pacid=23179513 polypeptide=Lus10002346 locus=Lus10002346.g ID=Lus10002346.BGIv1.0 annot-version=v1.0 MPEKKLMHALRYDRYGGGPAGLKHVEVPVPVAKKGEVLVKVEAVSLNPVDWKIQKGMLRPILPFRFPHIPGSDVAGEVVEVGPGVKKFSPGDKVVGMVNH FTGGGLAEYAVFKESITVKRPAEVSAAEAAGLPVAALTAHQALTQAAGIKLDGSGPAKNILITAGSGGVGHYAIQLAKLAANVHITATCGARNIQLGSSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	0	1
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	4.6	0.7834
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	4.7	0.8108
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	9.4	0.7721
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	12.0	0.7699
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	12.4	0.7655
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	14.5	0.7875
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	14.8	0.7651
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	17.5	0.7673
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	19.0	0.7668
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	19.6	0.7570

Compare expression of checked genes

Lus10002346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.