Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 439 / 1e-155 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 115 / 5e-29 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 87 / 4e-19 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 73 / 6e-14 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G61510 67 / 3e-12 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 65 / 2e-11 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G56460 52 / 2e-07 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G65560 43 / 0.0002 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003158 [exp] 630 / 0 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 530 / 0 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 528 / 0 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 395 / 6e-138 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 393 / 2e-137 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 387 / 2e-133 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 256 / 4e-85 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 130 / 1e-34 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 129 / 3e-34 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342800 [exp] 454 / 2e-161 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 451 / 2e-160 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 449 / 1e-159 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 437 / 6e-155 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 361 / 4e-126 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 114 / 1e-28 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 110 / 2e-27 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 83 / 1e-17 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 80 / 1e-16 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.004G233800 [exp] 72 / 6e-14 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10002347 pacid=23179517 polypeptide=Lus10002347 locus=Lus10002347.g ID=Lus10002347.BGIv1.0 annot-version=v1.0 ATGGCGACCGCTTCGAGTAGCGCGGTAGGGAAGAAGCTGATGCGCGCCCTTCAGTACGATAGCTGCGGCGGAGGAGCTTCAGCTCTGAAGCATGTTGAAG TTCCGATCCCGACTCCGGCGAAAGACGAGGTTTTGCTGAAACTGGAAGCGGTAAGTATCAACCCGATTAACTGGAAGGTTCAGAAGGGCATGCTCCGACC CTTTTTGCCGAGGAAATTACCTCGCATACCATGTGCTGATGTTGCTGGAGAAGTTGTAGATGTGGGTTTAGAAGTCAAGAAGTTCAAATCCGGCGACAAA GTCGTTGCCTACCTTGGCATTTCTAATGAAGGAGGAATGGCTGAGTATGCAGCTGCAAAGGAAACCTGCTCCGTTGCTAGACCAGCAGAAGTTTCGGCTC CGGAAGGTGCATCGTTGCCAGTTGCAGGCATCACAGCTTACCAGTCGCTCACTCGTTTTGCCGGAGTGAAACTTGACGGAACCGGCCCTCAGAAGAACAT TCTGGTGACTGCAGCCTCCGGCGGTGTTGGCCAATACGCAGTCCAGCTCGCAAAGCTAGGAAAGGCCCACGTAACAGCCACGTGCGGAGCTCGTAACATC GAACTGGTTAAGGGTCTGGGGGCCGACGAGGTTCTCGACTACAAAACTCCCGAGGGAGCAGCTCTCAAGAGCCCCTCGGGAAAGAAGTACGACGCTGTCG TTCACTGCACAACCGGGATTCCATGGTCGACTTTCGATGGCAACTTGAGCGAGGACGGGAAGGTCATTGACCTTACACCAGGGCCGAGTTCATTGTTGAC TTTTGCGTTGAAGAAGCTGACTTTCTCCAAGAAACAGCTGCTGCCTTTCCTTGCTGACATCAAGGATGAAGGATTGGAGGTGCTTGTGAATCTGGTGAAG GAGAAGAAGCTGAAGACGGTGATCGACTCGACATATCCGTTAAGCAAGGCCGAAGATGCTTGGGCTAAGAGCATCGAAGGACACTCCACGGGGAAGATCG TCATCGAGCCTTAG
AA sequence Show only first row Show all	>Lus10002347 pacid=23179517 polypeptide=Lus10002347 locus=Lus10002347.g ID=Lus10002347.BGIv1.0 annot-version=v1.0 MATASSSAVGKKLMRALQYDSCGGGASALKHVEVPIPTPAKDEVLLKLEAVSINPINWKVQKGMLRPFLPRKLPRIPCADVAGEVVDVGLEVKKFKSGDK VVAYLGISNEGGMAEYAAAKETCSVARPAEVSAPEGASLPVAGITAYQSLTRFAGVKLDGTGPQKNILVTAASGGVGQYAVQLAKLGKAHVTATCGARNI ELVKGLGADEVLDYKTPEGAALKSPSGKKYDAVVHCTTGIPWSTFDGNLSEDGKVIDLTPGPSSLLTFALKKLTFSKKQLLPFLADIKDEGLEVLVNLVK EKKLKTVIDSTYPLSKAEDAWAKSIEGHSTGKIVIEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	4.2	0.7667
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	5.5	0.7443
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10036233 [exp]	9.9	0.6708
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	11.2	0.6987
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	14.3	0.7027
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	16.1	0.6914
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	32.1	0.6601
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	38.7	0.6303
AT5G65030			unknown protein		Lus10024055 [exp]	39.9	0.6750
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	43.8	0.6478

Compare expression of checked genes

Lus10002347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.