Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17170 303 / 1e-103 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT5G51010 61 / 4e-11 Rubredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003157 [exp] 407 / 8e-145 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10016735 [exp] 54 / 9e-09 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1) Lus10022430 [exp] 51 / 1e-07 AT5G51010 190 / 8e-63 Rubredoxin-like superfamily protein (.1) Lus10010322 [exp] 43 / 0.0002 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 41 / 0.0006 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042600 [exp] 304 / 7e-104 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2) Potri.015G108100 [exp] 63 / 8e-12 AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1) Potri.012G109700 [exp] 0 / 1 AT5G51010 0 / 1 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF00301 [flax] [poplar] Rubredoxin Rubredoxin
Representative CDS sequence Show only first row Show all	>Lus10002349 pacid=23179509 polypeptide=Lus10002349 locus=Lus10002349.g ID=Lus10002349.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCATCATCGTCATCGGCCGTCTTCGCCGGCGCTTCATCTTCCTTCTCCAGAAACCACCGCTACCCTATCAAAACCACCACAGCTCTATCTC TCCAGAAATCCCAATTCCAAGGGCTGTCGATTGGAGAAGCAAAAAGGAGTAAGAGCATCAACAATGTCAGGGGAAGAAGAAGACTGGAGATTACTGCTAG GACGGCTTCGAAGAACATCGAAGTCGAAGTTGACAAGCCTCTCGGCCTCACCCTCGGCCAGAAGTCCGGCGGCGGCGTTGTCATCACGATTGATAAAAAC TCGGAAAATTGTACTAGATGGTTTTACATGATAGTTGGTTCAGGATCCGAGACCATGTCAAGAATCGTTCTTTTTCAAGGGGCTGTAGAAGGGGGAGGGA ATGCAGCAAAGGCAGGGCTGAAATCCGGAGACCAGGTGCTGTACACAAGCAGTTTTTTTGGGGATGAGCTATGGCCAGCTGATAAGCTTGGCTTCACGAA AACCGCCATCCAAGCTAAGCCCGACTCTGTCTACTTCGTCGTTAGTAGAGGAGGTGCAGATGTGGATGTTAAGAGACTGCCTAAACGACCGGCTCCTCCC CGATTCGGCAGGAAGTTGACCGATACTCAAAAGGCTAGAGCTACTCACATCTGCATAGACTGTGGGTACATATACACGTTGTCGAAGCCATTCGAAGAGC AGCCGGAAGGATATGTATGCCCGCAGTGTCTGGCGCCGAAAAAGAGGTTTGCCAAGTACGATGTGAACACGGGGAAGGCGATCGGAGGTGGGTTGCCGCC AATTGGGGTGATCATTGGGTTGCTTGCTGGTCTTGGTGGTGTTGGTGCATTGCTTGTCTATGGTCTTCAGTGA
AA sequence Show only first row Show all	>Lus10002349 pacid=23179509 polypeptide=Lus10002349 locus=Lus10002349.g ID=Lus10002349.BGIv1.0 annot-version=v1.0 MAASSSSSAVFAGASSSFSRNHRYPIKTTTALSLQKSQFQGLSIGEAKRSKSINNVRGRRRLEITARTASKNIEVEVDKPLGLTLGQKSGGGVVITIDKN SENCTRWFYMIVGSGSETMSRIVLFQGAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGGADVDVKRLPKRPAPP RFGRKLTDTQKARATHICIDCGYIYTLSKPFEEQPEGYVCPQCLAPKKRFAKYDVNTGKAIGGGLPPIGVIIGLLAGLGGVGALLVYGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	0	1
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	1.0	0.9408
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	2.0	0.9239
AT1G44920			unknown protein		Lus10007720 [exp]	4.2	0.9234
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	5.8	0.8629
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	7.7	0.8883
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	8.1	0.8961
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	8.5	0.9023
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	9.2	0.9048
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	12.4	0.9058
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	13.0	0.9086

Compare expression of checked genes

Lus10002349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.