Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64910 179 / 2e-54 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 177 / 2e-53 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 174 / 2e-52 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 171 / 2e-51 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 167 / 1e-49 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 165 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G64920 164 / 2e-48 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 160 / 6e-47 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT3G29630 158 / 2e-46 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 157 / 7e-46 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003154 [exp] 400 / 3e-140 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 167 / 1e-49 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 151 / 2e-43 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 149 / 1e-42 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10013337 [exp] 138 / 1e-38 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 121 / 4e-32 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 116 / 2e-30 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 115 / 3e-30 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 115 / 5e-30 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179700 [exp] 309 / 1e-104 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 196 / 9e-61 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 185 / 2e-56 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 131 / 2e-36 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 127 / 3e-34 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 126 / 4e-34 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 120 / 5e-32 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 118 / 4e-31 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 117 / 9e-31 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 111 / 1e-28 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10002350 pacid=23179501 polypeptide=Lus10002350 locus=Lus10002350.g ID=Lus10002350.BGIv1.0 annot-version=v1.0 ATGCCCGAGCCGCCCACTGGGAGGCTTGCAGACAGATGGGCGGATTGGTTGGGACAGTTCCCAACCGGTTCGATCATATTCTGCAATTTCTGCAGCGAAA CATTCTTGACCGACGAGCAGGTCCAGGAGCTAGCTTTCGGGTTGGAGAATACCGGACTCCCTTTCTTCCTGGTGTTGAATTTCCCAGCTCAGCTCGATAG TCAAACCGAGCTGGACCGGGCACTACGGGAGGGGTTCCTAGAGAGGGTGAAGGACAGAGGAGTCGTGAATACCGGGTGGGTACAACAGCCGCTCATATTA GCACACAGTAGCGTGGGTTGCTACTTGAACCATTCCGGATTCAGCTCGCTGATCGAAGGACTGATCCACGACTGTCAGTTGGTGTTGCTGCCGTTGAAAG GCGATCAGTACCTGAATGCGAAACTGATCACGGGAGACATGAAGGCTGGAATCGAGGTCGATCGGAGGGACGAGGATGGTTACTTCGGAAGGGACGATGT TACGAGAGCTGTCAATACGATGATGGCCGGTGATGCTGATAAGGAGCCTCTGAAGTCCATAAGGGAGAATCAGGAGAAGTGGAAGAAGTTTCTGTTAGAT AATGAGGCTCAGAATAAGTAA
AA sequence Show only first row Show all	>Lus10002350 pacid=23179501 polypeptide=Lus10002350 locus=Lus10002350.g ID=Lus10002350.BGIv1.0 annot-version=v1.0 MPEPPTGRLADRWADWLGQFPTGSIIFCNFCSETFLTDEQVQELAFGLENTGLPFFLVLNFPAQLDSQTELDRALREGFLERVKDRGVVNTGWVQQPLIL AHSSVGCYLNHSGFSSLIEGLIHDCQLVLLPLKGDQYLNAKLITGDMKAGIEVDRRDEDGYFGRDDVTRAVNTMMAGDADKEPLKSIRENQEKWKKFLLD NEAQNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64910			UDP-Glycosyltransferase superf...		Lus10002350 [exp]	0	1
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	3.7	0.7320
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10040940 [exp]	5.5	0.6470
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	10.5	0.7376
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	14.3	0.6653
AT3G23750			Leucine-rich repeat protein ki...		Lus10023220 [exp]	34.8	0.6376
					Lus10019378 [exp]	37.9	0.5994
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Lus10002719 [exp]	40.5	0.6019
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	47.2	0.5831
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	51.9	0.6222
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	52.4	0.5942

Compare expression of checked genes

Lus10002350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.