Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49690 77 / 1e-16 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 73 / 4e-15 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G22930 72 / 9e-15 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 67 / 5e-13 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 67 / 5e-13 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 67 / 5e-13 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT1G50580 65 / 2e-12 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 64 / 4e-12 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 61 / 4e-11 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 61 / 4e-11 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003154 [exp] 222 / 1e-70 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 77 / 1e-16 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 77 / 1e-16 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 77 / 1e-16 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10035951 [exp] 71 / 1e-14 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10042241 [exp] 68 / 1e-14 AT5G65550 168 / 4e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 71 / 3e-14 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 70 / 5e-14 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10026412 [exp] 65 / 3e-13 AT2G22590 173 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179700 [exp] 151 / 7e-44 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 81 / 6e-18 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 70 / 4e-14 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 68 / 1e-13 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 66 / 6e-13 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 66 / 1e-12 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 64 / 5e-12 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 60 / 1e-10 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 59 / 1e-10 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 59 / 2e-10 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002351 pacid=23179498 polypeptide=Lus10002351 locus=Lus10002351.g ID=Lus10002351.BGIv1.0 annot-version=v1.0 ATGAACGTGGATGGTGTTACCCGCCATATCCCTCCTTGTCGTCATTATAACACGGCGAATGTAGTTACGAGTCCGAGTAGAAACTACAACGAACAACCAA CCACCGCCGACGAGACAAAAAAAATGGGACGAACAGCAGAGTCATCACTGGCCGATGAGGAGCTCCACGTAGTGATGTTCCCTTGGTTCGCATTCGGCCA CATTTCGCCCTTCATCCAGCTCGCCAACAAGCTATCCCTCCACGGCAGAGTCCAGATTTCCTTCTTCTCCGCACCGGGGAACATCCCTCGTATCTCGAAC TCGCTTCTTCCTTCGCCAACCACACAAATCACCCCTCTCCCGATCCATCCGGTCGAAGGCCTCCCTCCGGGGCTCGACAGCACAGCAGAGCTCCTTCCGC ATCTCGCTGAGTTACTCAAAATCTCCCTCGGCCTTATGCAGCCGCAGGTGAAGGAGTTGTTGATCCAGCTCAAGCCAGATTTTGTCTTCCGGGGATGGGT TCTGAGCTCGGGATCAAGACCCTTAGCTTCACAGTTTTTTCTGCAGTTTCCACCGGGTACATGGTAG
AA sequence Show only first row Show all	>Lus10002351 pacid=23179498 polypeptide=Lus10002351 locus=Lus10002351.g ID=Lus10002351.BGIv1.0 annot-version=v1.0 MNVDGVTRHIPPCRHYNTANVVTSPSRNYNEQPTTADETKKMGRTAESSLADEELHVVMFPWFAFGHISPFIQLANKLSLHGRVQISFFSAPGNIPRISN SLLPSPTTQITPLPIHPVEGLPPGLDSTAELLPHLAELLKISLGLMQPQVKELLIQLKPDFVFRGWVLSSGSRPLASQFFLQFPPGTW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	0	1
AT1G17400			unknown protein		Lus10039921 [exp]	7.3	0.9270
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	7.9	0.9304
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	9.5	0.8888
					Lus10038463 [exp]	14.5	0.9222
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	14.6	0.8775
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	16.7	0.9199
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	16.9	0.9201
					Lus10013172 [exp]	17.4	0.7743
					Lus10009439 [exp]	17.5	0.9173
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	22.4	0.7534

Compare expression of checked genes

Lus10002351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.