Plant FIBer expression Database

Lus10002352 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43490 77 / 4e-16 unknown protein
AT5G48610 50 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003153
[exp]
946 / 0 AT5G43490 80 / 4e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G058600
[exp]
114 / 2e-27 AT5G43490 71 / 2e-14 unknown protein
Potri.017G058500
[exp]
114 / 2e-26 AT5G43490 85 / 5e-19 unknown protein
Potri.001G319500
[exp]
113 / 4e-26 AT5G43490 71 / 6e-14 unknown protein
Potri.001G319600
[exp]
108 / 2e-24 AT5G43490 71 / 6e-14 unknown protein
Potri.017G058701
[exp]
55 / 3e-08 AT5G48610 52 / 4e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10002352 pacid=23179496 polypeptide=Lus10002352 locus=Lus10002352.g ID=Lus10002352.BGIv1.0 annot-version=v1.0
ATGTCTCGCTGCTTTCCATTTCCTCCACCAGGATATGAGAAGAAGACTAGAGTTGACGATACCGACTTGCTAGCTAAGGATGTAGGGATGCGCTTTAAAC
ATGGTTATTCCCCGGATGTTTACTTTCATAGGCTGTGCCCGTGGGATGATGCTCTTAAGATATTAATTGCATCTGAAGCTCTTTGGTTCTTCATTGATGA
AATTCTATCTGTTGAGAAGCAGAAGGAGAAAAAGCACAAGAAAGATAAGAAGCACAAAGACAAGAAAGAGGATAAAGAGAAAAAGGATAAAGATAGAAGC
AAAGAAAAACACAGGGAGAAGAAGCACCGGAAAGAGAAGAGCAAAGACAAGGAGAAGGAAGGGGACAAAGAGAAAAATCGAGTAGAAGGTGGGCAGGCAG
CACAACACAATAATGGACAGAAGGTTAGCTCAAGTAGTGCTGAGAATAATGAGATCAAAGATTCGAAGTTTGTGCAGGAGTTGGCCAAAAGGATCAATGA
CAGTGGAGTATCACCAGCAACCCAGATGGTGCATAAGAATGCTGTTAATAATGATCAAAAGAGGGCAGAGCCACATGGTGTGTACCCCGGGAGTAGTAGC
ATTGGATCCCAGCCCAAGGAGAAGGAGAAAAATAAGGGAAACGGTGAAGATCGATCGAAATTCAATTGGCAAAGGAGTCTCATTGAAGCAAAAGACACGG
AAAATAACTTCGCTGGCATCGACAAACAAAGAGCTGAAGATGCTACGAAACTGGCGGAGAAGAAAAAGGATGAGAAGCCCGTTGAAGGTAAAGAGAAGAA
ACATAAGGATAGTAAGGAAAAGGATCGAGGTTCGAAATCAAAGAGCAAGGAAAAGGATAAGGAGAAGTTAAAAGAGGAGAGAGTGAAGGAAATAAAACAG
CCGGGTAAAGATCAGGCCTTGAAAGAAAGTAAGAACTCCTTGGACTTTGGGGATGCCATTCCATCTGATCTATCGAAGTTGAGAGGCACTAATTTCGGCG
GTGAGGGAAATGTGCGCAGGCATAATGAGATTGAGGGTGAGATCTTTAAGGAATTTGTTCCTAGACTAAAGGAAAGTAACAAGGATCCCTTGGACTTCCG
GAACATCAAGACCTCAAGCCCTTCAAAGTTGAGCAAGAATGCTGTCATAAGTGAGGGAACTATTGGGGCTCAGGTGTTAAAAGAAAGTGCCCCTAAGCCA
AAAGGAAGTAACAAGGACTCTTTGGACTTTCGGATTACGAAACCGTCAGATGCATCAAAGTTAGGCAGCACAACTTTCAGCAATGAGGGAATGCTTGGCA
AGCGTAAGGAACTTGATGATAGAGGTCTGCCAATCAAAGAATGTTACAAGGAATCCTCACACTCCCCGAATATCAAAACCTCAGATGCATCTCAGTTAAA
CTGCAAAACTTCGAGCAATGAGGGAACCCTTGGCAAACACAACGAGCTTGATGATAGTGGTAGCAAGATGAAAGAAAGTAACAAGAACTCCCTTAATTTC
CGGAGTAACAAAATCTCAGAACCCTTAAAGGTAAGCAGCCCGGCTTGCAGCAGCGAGGGAACTCTTGGGAAGCGAAAGGAGCTTGAGGTCAACGGACATT
TTCTCGACAATGGGCATCGGCCTAGCAAATTGCCAAGACCTGTCCCAACTCCTGATTCTATCATCCAAAATGGAAAGAAATCGGAACCATTCAGAACCAC
TCTTCAGCTTGCATCTGGGAAGCAAGAGGCAGCAGCTAATGGTAAGAGTGTAGAGATGATCAAGGAACACAGGATTAACGGGTTTATAACCGCTGAACAG
TCAAATCCATCCTCAGGAAGGACTCCTCCACCTGCTAAAGTACCACCAGCAGCTATTCCCAAAAAGGAAACTGTAAAATCACCTCATCCTGATACCAAGT
ATCTGGTTCAGATACTTTCTGTGCCTGAGCAGGTGGAACCGCCGGGCTTCTGCGACCAGGACTGGCTATTTAGTGGCATTCAGCCATTGTCAAAAAAGCC
TCGCAGGGATTCTAGTCTTGTGGGTGATGGAACTAAGGAAGTATGGGCAGAAGCTCTCCGGATAGAGTCTGCTGACATTTCAGCGCTGCCATATGTCATT
CCTTATTGA
AA sequence
>Lus10002352 pacid=23179496 polypeptide=Lus10002352 locus=Lus10002352.g ID=Lus10002352.BGIv1.0 annot-version=v1.0
MSRCFPFPPPGYEKKTRVDDTDLLAKDVGMRFKHGYSPDVYFHRLCPWDDALKILIASEALWFFIDEILSVEKQKEKKHKKDKKHKDKKEDKEKKDKDRS
KEKHREKKHRKEKSKDKEKEGDKEKNRVEGGQAAQHNNGQKVSSSSAENNEIKDSKFVQELAKRINDSGVSPATQMVHKNAVNNDQKRAEPHGVYPGSSS
IGSQPKEKEKNKGNGEDRSKFNWQRSLIEAKDTENNFAGIDKQRAEDATKLAEKKKDEKPVEGKEKKHKDSKEKDRGSKSKSKEKDKEKLKEERVKEIKQ
PGKDQALKESKNSLDFGDAIPSDLSKLRGTNFGGEGNVRRHNEIEGEIFKEFVPRLKESNKDPLDFRNIKTSSPSKLSKNAVISEGTIGAQVLKESAPKP
KGSNKDSLDFRITKPSDASKLGSTTFSNEGMLGKRKELDDRGLPIKECYKESSHSPNIKTSDASQLNCKTSSNEGTLGKHNELDDSGSKMKESNKNSLNF
RSNKISEPLKVSSPACSSEGTLGKRKELEVNGHFLDNGHRPSKLPRPVPTPDSIIQNGKKSEPFRTTLQLASGKQEAAANGKSVEMIKEHRINGFITAEQ
SNPSSGRTPPPAKVPPAAIPKKETVKSPHPDTKYLVQILSVPEQVEPPGFCDQDWLFSGIQPLSKKPRRDSSLVGDGTKEVWAEALRIESADISALPYVI
PY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43490 unknown protein Lus10002352
[exp]
0 1
AT5G41020 MYB myb family transcription facto... Lus10041714
[exp]
1.4 0.8984
AT5G43490 unknown protein Lus10003153
[exp]
5.2 0.8517
AT1G74250 DNAJ heat shock N-terminal dom... Lus10034688
[exp]
5.2 0.8685
AT4G25390 Protein kinase superfamily pro... Lus10027393
[exp]
9.2 0.8628
AT5G67320 HOS15 high expression of osmotically... Lus10024972
[exp]
9.7 0.8269
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10007273
[exp]
9.8 0.8670
AT1G31870 unknown protein Lus10033140
[exp]
11.4 0.8665
AT5G53800 unknown protein Lus10014800
[exp]
11.5 0.8728
AT5G14440 Surfeit locus protein 2 (SURF2... Lus10022288
[exp]
13.2 0.8600
AT1G03910 unknown protein Lus10027605
[exp]
15.4 0.8309

Lus10002352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.