Plant FIBer expression Database

Lus10002353 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07270 566 / 0 GTP cyclohydrolase I (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003152
[exp]
883 / 0 AT3G07270 579 / 0.0 GTP cyclohydrolase I (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G195000
[exp]
646 / 0 AT3G07270 590 / 0.0 GTP cyclohydrolase I (.1.2)
Potri.002G247100
[exp]
613 / 0 AT3G07270 551 / 0.0 GTP cyclohydrolase I (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0334 THBO-biosyn PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Representative CDS sequence
>Lus10002353 pacid=23179503 polypeptide=Lus10002353 locus=Lus10002353.g ID=Lus10002353.BGIv1.0 annot-version=v1.0
ATGGGCGCCTTGGATGAAGGGCATTTCCATGTGGTGCTTGAGAACGGAGTGAAATTTCTAGACTGCCCTGACCAGCTTGGATTTGAGGATCAGCAGCCTG
AGACTAGTTTAGATATTGAGGATGCTGTTAAAGTCCTTTTGCAAGGTTTGGGGGAGGATGTCAATAGAGAAGGAATCAGAAAGACTCCAATCCGTGTTGC
TAAAGCCCTCCTGGAAGCCACTAAAGGTTATAAGCAGAAGGTGAAGGACATAGTTGAGGGGGCTTTGTTTCCGGAAGCTGGTTTGAATGCTACAGTAGGG
CATGCAGGAGGAGCTGGGGGACTTGTGGTTGTCCGGGATCTCGATCTCTTCTCGTACTGTGAGTCTTGCCTGCTCCCGTTCCAGTTCAAATGCCACGTGG
GTTATATCCCATCTGGTCAGAGAGTTGTAGGGTTAAGCAAGCTTTCCAGGGTGGCTGATGTCTTTGCAAAGCGTCTACAAGACCCACAACGTCTGGCGAA
CGAAATCTGTTCAGCTCTTCATCAATGGATCAAGCCAGCAGGTGTTGCTGTCGTGCTCCAGTGCTGGCACCTCCATTTCCCAAGCTTAGAATCGTTCCTC
AAAGACTCCAATCATCAAGGATGGTTGAAGAACGGAGTGAAATTTCTGGAATGCCCTGACCAGCTTGGATTTGAGGATCAGCAGCCTGAGACTAGTTTAG
ATATTGAGGATGCTGTTAAAGTCCTTTTGCAAGGTTTGGGGGAGGATGTCAATAGAGAAGGAATCAGAAAGACTCCAATCCGTGTTGCTAAAGCCCTCCT
GGAAGCCACTAAAGGTTATAAGCAGAAGGTGAAGGACATAGTTGAGGGGGCTTTGTTTCCGGAAGCTGGTTTGAATGCTACAGTAGGGCATGCAGGAGGA
GCTGGGGGACTTGTGGTTGTCCGGGATCTCGATCTCTTCTCGTACTGTGAGTCTTGCCTGCTCCCGTTCCAGTTCAAATGCCACGTGGGTTATATCCCAT
CTGGTCAGAGAGTTGTAGGGTTAAGCAAGCTTTCCAGGGTGGCTGATGTCTTTGCAAAGCGTCTACAAGACCCACAACGTCTGGCGAACGAAATCTGTTC
AGCTCTTCATCAATGGATCAAGCCAGCAGGTGTTGCTGTCGTGCTCCAGTGCTGGCACCTCCATTTCCCAAGCTTAGAATCGTTCCTCAAAGACTCCAAT
CATCAAGGATGGTTGAAGGTGCTAGTCCGTGCAGGCTCGGGTGTTTTCAAAAACGATAAGTGCGACGGCTGGAGTGATTTTTCAAGTCTCCTGAGGTTCA
GAGGCATAAATACTGAGAATGCACTTCCGGGAGATTCCATAACCTCATGGTGTCCATCTCTATCCTGCTCGACCCTAAAAGTTCCTTCCTTGAACGGACA
ACTCAACTCAGGAATGATCACAGCGGTGGATTCGATACTCAAGTCATTAGGGGAAGATCCCTTGAGAGAAGAGCTTATCGGGACGCCCAGTCGTTTCGTG
AAGTGGCTAATGAATTTTCAGAATGCCAGTTTGGAGATGAAGTTAAATGGCGTTGCCCATGGTAGGGTGGATCATCATCTGAAGGCTAATGGTGAAGTGA
ACCATGCCAAAGAGCAAATGCAGTCCGAGGTAAACTTGTCATTCTGGTCACAATGCGAACATCATTTACTGCCTTTCTATGGAGTTGTGCATATTGGATA
CTTCTCTTCTGAAGGGTTCAATCCTATCCCGAAGTCCCTTCTGCAATCAATAGTCCATTTTTACGGGTTCAAGCTCCAAGTACAGGAGAGACTTACCAGG
CAGATTGCAGAGACTGTTTCGCCATTATTAGGCGGAGATGTCATAGTAGTTGTAGAAGCTGGGCACACTTGTATGATTTCCAGAGGCATTGAAAAGTTCG
GAAGCAGTACAGCCACAATAGCCGTTTTGGGACGATTTTCGACCGATGCTGCTGCTAGAGCCATGTTCTTGCAGAGCCTCCCAAATAGTAGTGCAGCCTT
GGGAGCTTCATGA
AA sequence
>Lus10002353 pacid=23179503 polypeptide=Lus10002353 locus=Lus10002353.g ID=Lus10002353.BGIv1.0 annot-version=v1.0
MGALDEGHFHVVLENGVKFLDCPDQLGFEDQQPETSLDIEDAVKVLLQGLGEDVNREGIRKTPIRVAKALLEATKGYKQKVKDIVEGALFPEAGLNATVG
HAGGAGGLVVVRDLDLFSYCESCLLPFQFKCHVGYIPSGQRVVGLSKLSRVADVFAKRLQDPQRLANEICSALHQWIKPAGVAVVLQCWHLHFPSLESFL
KDSNHQGWLKNGVKFLECPDQLGFEDQQPETSLDIEDAVKVLLQGLGEDVNREGIRKTPIRVAKALLEATKGYKQKVKDIVEGALFPEAGLNATVGHAGG
AGGLVVVRDLDLFSYCESCLLPFQFKCHVGYIPSGQRVVGLSKLSRVADVFAKRLQDPQRLANEICSALHQWIKPAGVAVVLQCWHLHFPSLESFLKDSN
HQGWLKVLVRAGSGVFKNDKCDGWSDFSSLLRFRGINTENALPGDSITSWCPSLSCSTLKVPSLNGQLNSGMITAVDSILKSLGEDPLREELIGTPSRFV
KWLMNFQNASLEMKLNGVAHGRVDHHLKANGEVNHAKEQMQSEVNLSFWSQCEHHLLPFYGVVHIGYFSSEGFNPIPKSLLQSIVHFYGFKLQVQERLTR
QIAETVSPLLGGDVIVVVEAGHTCMISRGIEKFGSSTATIAVLGRFSTDAAARAMFLQSLPNSSAALGAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07270 GTP cyclohydrolase I (.1.2) Lus10002353
[exp]
0 1
AT5G65720 ATNIFS1, NIFS1 ... NITROGEN FIXATION S HOMOLOG 1,... Lus10019252
[exp]
9.3 0.8590
AT4G15248 CO B-box type zinc finger family ... Lus10039694
[exp]
9.9 0.8632
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Lus10039008
[exp]
10.4 0.8589
AT5G15450 AtCLPB3, APG6, ... CASEIN LYTIC PROTEINASE B-P, A... Lus10013191
[exp]
11.2 0.8447
AT3G52960 Thioredoxin superfamily protei... Lus10003373
[exp]
13.4 0.8548
AT5G51720 2 iron, 2 sulfur cluster bindi... Lus10031686
[exp]
13.7 0.8573
AT5G51720 2 iron, 2 sulfur cluster bindi... Lus10031105
[exp]
15.3 0.8484
AT3G01060 unknown protein Lus10030700
[exp]
17.3 0.8211
AT5G58290 RPT3 regulatory particle triple-A A... Lus10037597
[exp]
22.6 0.8310
AT1G19910 AVA-2PE, ATVHA-... VACUOLAR-TYPE H+ ATPASE C2, AT... Lus10028370
[exp]
25.3 0.8200

Lus10002353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.