Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) AT5G48640 387 / 1e-137 Cyclin family protein (.1) AT4G19600 93 / 2e-21 CYCT1;4 Cyclin family protein (.1) AT5G45190 93 / 3e-21 Cyclin family protein (.1.2) AT1G35440 79 / 2e-17 CYCT1;1 cyclin T1;1 (.1) AT1G27630 72 / 2e-14 CYCT1;3 cyclin T 1;3 (.1) AT4G19560 71 / 7e-14 CYCT1;2 Cyclin family protein (.1) AT2G26430 67 / 9e-13 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G27620 66 / 4e-12 CYCH;1 cyclin H;1 (.1) AT2G22490 49 / 1e-06 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003151 [exp] 521 / 0 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10040640 [exp] 88 / 1e-19 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10021927 [exp] 72 / 3e-14 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10017091 [exp] 64 / 9e-12 AT5G27620 439 / 2e-155 cyclin H;1 (.1) Lus10036192 [exp] 64 / 2e-11 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10041418 [exp] 63 / 3e-11 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036509 [exp] 59 / 8e-10 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10038329 [exp] 59 / 8e-10 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10037811 [exp] 57 / 4e-09 AT5G27620 435 / 7e-154 cyclin H;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194900 [exp] 412 / 2e-147 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 411 / 4e-147 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.003G148800 [exp] 87 / 3e-19 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 86 / 4e-19 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 85 / 2e-18 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 82 / 2e-17 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.005G027700 [exp] 71 / 7e-14 AT5G27620 427 / 6e-151 cyclin H;1 (.1) Potri.008G043600 [exp] 68 / 7e-13 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.002G032300 [exp] 64 / 1e-11 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.010G090400 [exp] 62 / 5e-11 AT4G19600 171 / 1e-48 Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002354 pacid=23179499 polypeptide=Lus10002354 locus=Lus10002354.g ID=Lus10002354.BGIv1.0 annot-version=v1.0 ATGGCTTCAAATTTCTGGGCTTCTTCTCACTTCCGCCAGCTCATGGACCCGGAAGATGTCGACGTGGTACAGCAGCTGGACAAAGACAGAGGCATCACCG TCGATGATTTCAAGCTCATCAAGATGCAGATGGCAAATTATATAGCGAAATTGGCTCAGTCAGTTAAAGTAAGGCAAAGGGTTGTCGCCACCGCGATTAC TTACATGCGACGTGTATATATCAGAAAGAGTATGTCAGAGTACGATCCACGTCTGGTAGCTCCAACCTGCTTGTATTTGGCATCAAAAGCAGAAGAAAGC ACGGTGCAAGCCCGAGCACTTGTATTCTATATTAAAAAGTTATATATCAATGATGACAAGTTTAAGTTTGAGATCAAAGACATACTCGAGATGGAAATGA AAATCTTGGAAGCTCTTAACTACTATTTAGTAGTCTTTCATCCTTATCGGTCCCTGTCTCAGTTCCTACAAGATGCTGGCGTCCATGATGTAAATATGAT TCAGTTGTCTTGGGGACTTGTGAACGACACCTACAAGATGGACCTGATTCTTATGCACCCGCCACATCTGATTGCCTTGGCTTGCATTTACATCGCTAGC GTGTTCAGAGAAAAAGACGTAACAGCCTGGTTCGAGGAGCTTCGCGTAGATATGAATGTGGTGAAGTACATTTCTATGGAGATCTTAGATTTTTATGAAG ACCAGCACAGATTAGCTGGGGAGGATAGAGTCGGCGCAGCTTTCCACAAGCTTGCCTCAAAGCCTTAG
AA sequence Show only first row Show all	>Lus10002354 pacid=23179499 polypeptide=Lus10002354 locus=Lus10002354.g ID=Lus10002354.BGIv1.0 annot-version=v1.0 MASNFWASSHFRQLMDPEDVDVVQQLDKDRGITVDDFKLIKMQMANYIAKLAQSVKVRQRVVATAITYMRRVYIRKSMSEYDPRLVAPTCLYLASKAEES TVQARALVFYIKKLYINDDKFKFEIKDILEMEMKILEALNYYLVVFHPYRSLSQFLQDAGVHDVNMIQLSWGLVNDTYKMDLILMHPPHLIALACIYIAS VFREKDVTAWFEELRVDMNVVKYISMEILDFYEDQHRLAGEDRVGAAFHKLASKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48630			Cyclin family protein (.1.2)		Lus10002354 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	2.6	0.8542
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	5.0	0.8325
AT5G42570			B-cell receptor-associated 31-...		Lus10031546 [exp]	6.0	0.8328
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	10.1	0.8397
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	12.6	0.7821
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	16.1	0.7867
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	23.1	0.8296
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	25.4	0.7890
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	25.4	0.8377
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	25.9	0.8051

Compare expression of checked genes

Lus10002354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.