Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 139 / 2e-41 J20 DNAJ-like 20 (.1.2) AT2G17880 67 / 4e-14 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 67 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G13310 64 / 6e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 66 / 1e-12 DNAJ heat shock family protein (.1) AT3G17830 65 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G71000 63 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 65 / 3e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT5G59610 63 / 6e-12 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36040 61 / 1e-11 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003150 [exp] 259 / 1e-88 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002356 [exp] 251 / 1e-85 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10003149 [exp] 232 / 2e-77 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10016637 [exp] 142 / 3e-42 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10022550 [exp] 135 / 7e-40 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10017263 [exp] 88 / 8e-22 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10019668 [exp] 78 / 3e-18 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2) Lus10019669 [exp] 77 / 9e-18 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10034484 [exp] 76 / 1e-17 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 150 / 6e-46 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 140 / 4e-42 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.002G020800 [exp] 92 / 3e-23 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 88 / 9e-22 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 87 / 1e-21 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 82 / 1e-19 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 79 / 4e-19 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G088900 [exp] 81 / 5e-19 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G078801 [exp] 74 / 2e-16 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.007G107600 [exp] 70 / 3e-15 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10002355 pacid=23179502 polypeptide=Lus10002355 locus=Lus10002355.g ID=Lus10002355.BGIv1.0 annot-version=v1.0 ATGAGTCAAGCAATCATCTCCGCCGGACCCCAACTCATCGCCGGCCGTTCCCCCACCGCCGCAGCACCCACCTTCACTCCCAATTCCAACACCCTCTCCT TCACTACTTCCCAACCCAGCAAATATTCTCCACTCCGACGATCTCGCCGTCGACCCATCACTCCAATCAGAGCATCCGCCACCGAAACCAGCAGCAGCTT ATACGTAACCACCCAAAGCTTCTACGAGCTCCTCGGCATCCAGACGACGGTGACGGCGCCGGAGATCAAGCAGGCCTACAGGAAACTAGCACGGAAGTAC CACCCTGACGTTTCCCCGCCGGAGAAAACAGAGGAGTTTACAAAACAGTTTCTGAGAGTCCAGGAGGCTTACGAAACGCTGTCGGATCCACGGAGCAGGG CCGATTACGACAGAGATTTGGCTTCCGGGTTCCACTTGGGATTCTCGGCCGGGAAGCAATTCAACAAGGGGATGGATCCGACGGGGGAGTGGAAACAGAG GTGGGAGAGCCAGATTGAGGAGTTGCAGTGGAAACAGAGCAAGTGTTCTTGGGGTGATCGAATGAGGACGAAGAGTCGTAGATCTTGCGAGTTCAGTTTC AATTAG
AA sequence Show only first row Show all	>Lus10002355 pacid=23179502 polypeptide=Lus10002355 locus=Lus10002355.g ID=Lus10002355.BGIv1.0 annot-version=v1.0 MSQAIISAGPQLIAGRSPTAAAPTFTPNSNTLSFTTSQPSKYSPLRRSRRRPITPIRASATETSSSLYVTTQSFYELLGIQTTVTAPEIKQAYRKLARKY HPDVSPPEKTEEFTKQFLRVQEAYETLSDPRSRADYDRDLASGFHLGFSAGKQFNKGMDPTGEWKQRWESQIEELQWKQSKCSWGDRMRTKSRRSCEFSF N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	2.0	0.8248
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	5.2	0.7796
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	12.1	0.7510
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	16.5	0.7636
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	19.6	0.7435
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	24.7	0.7434
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	25.1	0.7101
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	32.2	0.6823
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	35.6	0.7393
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	37.8	0.7594

Compare expression of checked genes

Lus10002355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.