Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 138 / 3e-41 J20 DNAJ-like 20 (.1.2) AT2G17880 70 / 3e-15 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 72 / 8e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 70 / 3e-14 DNAJ heat shock family protein (.1) AT3G17830 69 / 6e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G36040 65 / 2e-13 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 67 / 5e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT5G59610 64 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G13310 63 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT5G18140 64 / 3e-12 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003149 [exp] 287 / 3e-99 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10003150 [exp] 262 / 7e-90 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002355 [exp] 231 / 1e-77 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10016637 [exp] 142 / 1e-42 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10022550 [exp] 135 / 9e-40 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10019669 [exp] 80 / 4e-19 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10000690 [exp] 79 / 7e-19 AT4G13830 72 / 2e-16 DNAJ-like 20 (.1.2) Lus10017263 [exp] 79 / 2e-18 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10019668 [exp] 77 / 6e-18 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 146 / 2e-44 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 141 / 2e-42 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.009G131800 [exp] 83 / 1e-20 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G088900 [exp] 83 / 7e-20 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.004G172300 [exp] 82 / 8e-20 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 82 / 1e-19 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 81 / 3e-19 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 80 / 6e-19 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G078801 [exp] 73 / 2e-16 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.005G113100 [exp] 72 / 4e-16 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10002356 pacid=23179515 polypeptide=Lus10002356 locus=Lus10002356.g ID=Lus10002356.BGIv1.0 annot-version=v1.0 ATGAGTCAATCAATCATCTCCGCCGGAACCCAACTCGCCGTCGGCCGTTTCCAATCCGCCCTGATCACACCGACCTTCACTCCCACTCCTCACAATCTCA CCTTCACTCGCCGTCGACCCATCACTCTGATCATGAGGGCATCCGCCTCCACGGGGGCAGCCGCCACAGAAAGCATCAGCCTTTACGTACCCACCGGCAG CTTCTACGACCTGCTGGGGATTCCGGAGAACGTGACGGCGCCGGAGATCAAGCAAGCGTACAGGAAGCTAGCTAGGAAGTACCACCCGGACGTTTCGCCG CCGGAGAAAGCAGAGGAGTTTACGAAGCAGTTTCTGAGAGTTCAGGAGGCGTATGAAACGCTGTCGGATCCGCGGAGCAGGGCGGAGTACGATAGAGATT TAGCGTCCGGGTTCCACCTGGGGTTTTCTGCTCGGAAGCAATTCGATAAAGGGATGGATCCGAAGGGGGGATGGAGGCAGAGGTGGGAGAGTCAGGTGGA GGAGTTGCAGAGCATGCGGCGGGGGAGACAGAGCAGTTGGGGAGATCGAATGAGGAGCCGTAGATCATCATGCGATTTCAGTTTTGATTGA
AA sequence Show only first row Show all	>Lus10002356 pacid=23179515 polypeptide=Lus10002356 locus=Lus10002356.g ID=Lus10002356.BGIv1.0 annot-version=v1.0 MSQSIISAGTQLAVGRFQSALITPTFTPTPHNLTFTRRRPITLIMRASASTGAAATESISLYVPTGSFYDLLGIPENVTAPEIKQAYRKLARKYHPDVSP PEKAEEFTKQFLRVQEAYETLSDPRSRAEYDRDLASGFHLGFSARKQFDKGMDPKGGWRQRWESQVEELQSMRRGRQSSWGDRMRSRRSSCDFSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	2.2	0.9393
AT4G16850			unknown protein		Lus10015507 [exp]	6.7	0.9264
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	10.2	0.9042
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	11.5	0.9355
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	12.2	0.9338
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	12.4	0.9038
					Lus10006216 [exp]	14.3	0.8822
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	15.9	0.9139
AT4G27310	CO		B-box type zinc finger family ...		Lus10018513 [exp]	18.7	0.9111
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	21.6	0.9068

Compare expression of checked genes

Lus10002356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.