Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41340 272 / 9e-94 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT1G63800 269 / 2e-92 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT2G46030 254 / 1e-86 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT1G64230 100 / 2e-26 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 99 / 3e-26 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT2G02760 99 / 3e-26 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G62540 99 / 3e-26 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G78870 99 / 6e-26 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT3G08690 98 / 6e-26 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G14400 97 / 1e-25 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042136 [exp] 303 / 6e-106 AT1G63800 267 / 2e-92 ubiquitin-conjugating enzyme 5 (.1) Lus10014763 [exp] 268 / 6e-92 AT1G63800 294 / 6e-103 ubiquitin-conjugating enzyme 5 (.1) Lus10036372 [exp] 256 / 3e-87 AT1G63800 286 / 9e-100 ubiquitin-conjugating enzyme 5 (.1) Lus10032274 [exp] 247 / 5e-84 AT1G63800 278 / 5e-97 ubiquitin-conjugating enzyme 5 (.1) Lus10024638 [exp] 207 / 3e-68 AT1G63800 229 / 2e-77 ubiquitin-conjugating enzyme 5 (.1) Lus10013263 [exp] 99 / 3e-26 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 99 / 3e-26 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10036727 [exp] 99 / 3e-26 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 99 / 7e-26 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073400 [exp] 301 / 2e-105 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.001G101900 [exp] 275 / 3e-95 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.002G161000 [exp] 274 / 1e-94 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.014G086600 [exp] 271 / 3e-93 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.003G129700 [exp] 268 / 4e-92 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.013G064400 [exp] 100 / 2e-26 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 99 / 3e-26 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G111400 [exp] 99 / 3e-26 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.015G064000 [exp] 99 / 6e-26 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.001G392500 [exp] 99 / 6e-26 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10002359 pacid=23179425 polypeptide=Lus10002359 locus=Lus10002359.g ID=Lus10002359.BGIv1.0 annot-version=v1.0 ATGTTTGCCAGTCTTCTACTTGTCTTGGACATATTGACTGTATCAGAAGGTTGTTTTCAACGTAAGGGCCTTGGTAATTCAGGAAGTGGGTTGGCACTTC AATTGTTGATTACAATGTCTTCTCCAAGTAAGAGGAGGGAGATGGATGTCATGAAACTGATGATGAGCGATTACAATGTGGAGACGATAAACGATGGACT CAATGAATTTAATGTGGAATTTAATGGCCCGAAAGAAAGCCCATATGAAGGCGGGGTCTGGAAAATACGTGTTGAACTTCCTGATGCTTATCCATACAAG TCTCCTTCGATTGGGTTCGTGAACAAGATATTTCACCCAAACGTCGATGAACTCTCGGGTTCTGTTTGTTTGGATGTTATCAATCAATCATGGAGTCCAA TGTTCGATCTCTTGAACGTGTTTGAAGTTTTCCTGCCACAGTTATTATTGTACCCGAACCCATCAGACCCACTGAACGGTGATGCAGCCGCGTTGATGAT GAAAGACCGCGAAAAGTACGATAAGAAAGTGAAAGAGTACTGTGACCAATATGCTAAGAAGGAAAACATAGTGAAATCAACGGCTGAAGAAGAGAGCGAA GACGAAGACGAAGACGAAGATGTCAGCGACGATGATGGCAGATCAAGCGACGAGTAA
AA sequence Show only first row Show all	>Lus10002359 pacid=23179425 polypeptide=Lus10002359 locus=Lus10002359.g ID=Lus10002359.BGIv1.0 annot-version=v1.0 MFASLLLVLDILTVSEGCFQRKGLGNSGSGLALQLLITMSSPSKRREMDVMKLMMSDYNVETINDGLNEFNVEFNGPKESPYEGGVWKIRVELPDAYPYK SPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAAALMMKDREKYDKKVKEYCDQYAKKENIVKSTAEEESE DEDEDEDVSDDDGRSSDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	0	1
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	1.7	0.8421
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	6.3	0.7721
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	8.0	0.7089
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	14.3	0.6637
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	17.0	0.7010
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	17.7	0.7151
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	18.0	0.7144
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	19.1	0.7304
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	28.2	0.6560
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	34.9	0.7140

Compare expression of checked genes

Lus10002359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.