Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11130 622 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT1G14790 371 / 1e-116 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT3G49500 294 / 1e-87 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19930 96 / 2e-20 RNA-dependent RNA polymerase family protein (.1) AT2G19910 92 / 4e-19 RNA-dependent RNA polymerase family protein (.1) AT2G19920 82 / 5e-16 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042134 [exp] 944 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10019164 [exp] 404 / 1e-128 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10002910 [exp] 304 / 3e-93 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 300 / 2e-89 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034262 [exp] 213 / 7e-64 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 94 / 7e-23 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 84 / 2e-16 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034391 [exp] 54 / 5e-09 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073700 [exp] 717 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.008G136100 [exp] 400 / 4e-127 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 395 / 2e-126 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 390 / 2e-123 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 385 / 1e-121 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.018G028100 [exp] 321 / 3e-97 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 309 / 5e-93 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.007G081300 [exp] 103 / 6e-23 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 101 / 4e-22 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10002361 pacid=23179431 polypeptide=Lus10002361 locus=Lus10002361.g ID=Lus10002361.BGIv1.0 annot-version=v1.0 ATGCTCAAATTTGAGTCAAACAACAGGATGCTTAATATCACTAAGTGCAGTGACGCCATGCCTTGCTATTTGAATCGGGAGATCATTTCTCTTTTGTCTA CTTTGGGAGTGAGAGATGAAGCATTTTTAGCTTTGCAGCTTGAACAACTGCAACAAGTTGGCAAAATGCTTATCAGTCGAGGAGCAGCTTTGGGTGTCCT AGAAAATCTAGCTTGGGCTAATGCTAAGAGCTCTTTGGTGAAGATACTGCTTCAAGGTTATGAGCCTAACGAGGAACCTTACCTCTCAATGATGCTACAG TCTTATCATGATAATATGCTGTCAGAATTGAGAGGTAGGTGTCGAATTCTAGTCCCTAAGGGCCGTGTCCTGATTGGATGCTTGGATGAGAGCGGCATCC TTGAATATGGCCAAGTTTATGTGCGTCTGACAAGGACCAAAACAGAGCTACAGTGTGGGGATCAGAGTTTCTTCCGGAATGTTGATGAGAAGACATCTGT AATAACTAGTAAGGTGGTTGTCACTAAGAATCCGTGTCTGCATCCAGGTGATATCAGAGTGCTTGATGCTGTATATCATGAGGTCTTGGAAAAGACGGGT TTGGTCGATTGTATTCTTTTCCCACAAAAGGGACCCCGGCCTCATCCAAATGAATGCTCTGGTGGCGACCTTGATGGCGACCTGTATTTTATTAGTTGGG ATGAAGACCTGATTCCGGCACAAACTGTGGCTCCTATGGACTACATCGGAGGAAGGCCTCGAATCATGGATCATGCCGTCAAAATGGAGGAGATACACAA GTTCTTTGTTGATTACATGATAAACGATACTCTGGGTGCCATCTCCACCGCTCATTTAGTTCTTGCGGACAAGGAACCAGAGAAAGCCTCCAGTGAAAAA TGCCTGGAGTTGGCTAATCTGCATTCGATGGCAGTCGATTTCGCCAAAACCGGAGCACCAGCTGAGATGCCTAGGTATCTAAAACCCAAAGCATTCCCGG ATTTCATGGAGAGGTCAGAGAAGCCAATGTATGTCTCGGATGGAGTACTGGGAAAGCTCTATCATGCCGCTCTAACCTCGTCCACTCAAGCTGGATTCAG CTTTGTTTGGTCGAGGCAGGTCGCTGAATCAACTTACGACCGTGATCTCGAGGTGGAAGGTTTCGAGAACTTCCTGCAAACCGCTGCACGCCACAGGGCC ATGTACATGGAGAAAATGAGCGAGCTGATGAACTATTATGATGCGAGGCATGAAGACGAGATACTCACTGGGAATCTACGCAGCAAGGCGGCATATCTAC AGCGTGACAACAGGAGGTACGGGGAGACTAAAGACCGGATCCTCGTAGCGATAAAATCACTACAGAAGGATGCTAAGGATTGGTTCGATGGAAGACGCAG CAAGGCGGCATATCTACAGCGTGACAACAGGAGGTACGGGGAGACTAAAGACCGGATCCTCGTAGCGATAAAATCACTACAGAAGGATGCTAAGGATTGG TTCGATGGAAGCTGCAGCATAAACGATTATCAGAGGTTGGCATCCGCATGGTACCATGTAAGTTATCATCCGGATTATTTCGAAGAAGGGATTTCGGGGT TGAGCTTCCCGTGGATCCTAGTCGATATTCTGGTTGGTATCAAATCTATGAAGGACGGAAAGGGCAGCAAATCAGGTGAGAGCAGCAGCGCCAGTAATGC TACCTAA
AA sequence Show only first row Show all	>Lus10002361 pacid=23179431 polypeptide=Lus10002361 locus=Lus10002361.g ID=Lus10002361.BGIv1.0 annot-version=v1.0 MLKFESNNRMLNITKCSDAMPCYLNREIISLLSTLGVRDEAFLALQLEQLQQVGKMLISRGAALGVLENLAWANAKSSLVKILLQGYEPNEEPYLSMMLQ SYHDNMLSELRGRCRILVPKGRVLIGCLDESGILEYGQVYVRLTRTKTELQCGDQSFFRNVDEKTSVITSKVVVTKNPCLHPGDIRVLDAVYHEVLEKTG LVDCILFPQKGPRPHPNECSGGDLDGDLYFISWDEDLIPAQTVAPMDYIGGRPRIMDHAVKMEEIHKFFVDYMINDTLGAISTAHLVLADKEPEKASSEK CLELANLHSMAVDFAKTGAPAEMPRYLKPKAFPDFMERSEKPMYVSDGVLGKLYHAALTSSTQAGFSFVWSRQVAESTYDRDLEVEGFENFLQTAARHRA MYMEKMSELMNYYDARHEDEILTGNLRSKAAYLQRDNRRYGETKDRILVAIKSLQKDAKDWFDGRRSKAAYLQRDNRRYGETKDRILVAIKSLQKDAKDW FDGSCSINDYQRLASAWYHVSYHPDYFEEGISGLSFPWILVDILVGIKSMKDGKGSKSGESSSASNAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	0	1
AT4G30845			unknown protein		Lus10026098 [exp]	1.4	0.9423
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	3.6	0.9434
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	5.3	0.9323
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	7.9	0.9359
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	8.4	0.9289
AT5G16030			unknown protein		Lus10017573 [exp]	8.4	0.8763
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	9.8	0.9125
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	12.2	0.9076
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	15.5	0.9285
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	15.9	0.9213

Compare expression of checked genes

Lus10002361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.