Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24450 171 / 4e-54 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042133 [exp] 325 / 4e-114 AT1G24450 167 / 4e-52 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078400 [exp] 173 / 3e-55 AT1G24450 193 / 3e-63 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1) Potri.015G073900 [exp] 165 / 4e-52 AT1G24450 157 / 6e-49 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Lus10002362 pacid=23179423 polypeptide=Lus10002362 locus=Lus10002362.g ID=Lus10002362.BGIv1.0 annot-version=v1.0 ATGGATTCTCGAAGCTCCATCTTCTTCTCCCTATTCACCGCTCTGGCAATCCTCTCTCATTCACAGGTAACTGAGTCCTTTGATCCGAGGCTCGAGTCCA TTGATCCGAGGATCGAGCTCCGCTTATCGCCATTCTCATCCGCTCTCGTAGCTCTCCAGAAACAAATCAACTATACTTTCCAGAACGATGGGCTGCTCCG TCTGGCAATGACCCACTCCTCTTACTCCATCGAGAGCAACAAGGCGCTGAGCGTCTTGGGTGCCAATGTCATTGACACGGCTGTCTCAATGCAGTCCTTC CGGAGAGACATTGACATCTCTTCAACCACTCTCGCTAAACGGATTGCGGATGTTTCAAACGTGGAAAAGTGTGCTACTGATGGGAAGCGATTGGGGCTGG ACAAGATCGTGAGGGTTTCGTCCAAGACCGATCCTTCGACGGATTCTGTGGTATGTGGCGCTTTCAGAGCGATCTTCGGTGCTATTGCTTTGGACACCGG GAAGGCTGATAATGCTGGGAAGGTGTTCTTGAATGTTCATGTTGGTGGTGAGGTTGGAAAATCTCATCATATCATATTGTAA
AA sequence Show only first row Show all	>Lus10002362 pacid=23179423 polypeptide=Lus10002362 locus=Lus10002362.g ID=Lus10002362.BGIv1.0 annot-version=v1.0 MDSRSSIFFSLFTALAILSHSQVTESFDPRLESIDPRIELRLSPFSSALVALQKQINYTFQNDGLLRLAMTHSSYSIESNKALSVLGANVIDTAVSMQSF RRDIDISSTTLAKRIADVSNVEKCATDGKRLGLDKIVRVSSKTDPSTDSVVCGAFRAIFGAIALDTGKADNAGKVFLNVHVGGEVGKSHHIIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	0	1
AT1G67170			unknown protein		Lus10015495 [exp]	2.0	0.9012
AT1G79660			unknown protein		Lus10024088 [exp]	2.4	0.8999
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	2.6	0.9114
AT2G37480			unknown protein		Lus10024420 [exp]	3.9	0.8986
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	4.1	0.8728
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	5.9	0.8942
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	6.9	0.8945
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	8.0	0.8902
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	9.8	0.8678
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	9.9	0.8884

Compare expression of checked genes

Lus10002362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.