Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48010 884 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT5G14870 838 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT4G30360 785 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 776 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 692 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30560 653 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 648 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 646 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 643 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT1G01340 642 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042132 [exp] 1252 / 0 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10015510 [exp] 814 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 808 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 806 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10019983 [exp] 804 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 795 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 763 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 749 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10021461 [exp] 717 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067000 [exp] 1036 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G097600 [exp] 818 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.013G108200 [exp] 784 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.018G009200 [exp] 754 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.009G010700 [exp] 691 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 664 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 646 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 642 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 636 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 635 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002363 pacid=23179413 polypeptide=Lus10002363 locus=Lus10002363.g ID=Lus10002363.BGIv1.0 annot-version=v1.0 ATGGATCGCCTCCACAGCCAAGCATTCTCCTCTTTCCCGCCGTTCCCACCATTCCAGCCGCTGAACTTCTCCAAAACCTTCGACCTCCGGAAGAAAGTCC CCTGGTGGGACCACATCCTCGATCCAGGTTCCGAGCTCGTCAGCAAATGGAACCACATCTTCCTCGTCACCTGCATCATCGGCCTCTTCGTCGACCCTCT CTACTTCTTCCTCCCGGTCATCAACGGCGACTCCTGCCTCGCCTCCGACACCCCCCTCGGGATCTGGGTCACCCTGGCCCGAACCATCACTGATCTCTTC TTCATCCTCCACGTCTGCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAGCTCTAGGGTCTTCGGCAGAGGCGAGCTCGTCATGGATCCCAGGCAGATCG CGATTCGCTACGCCAGGTCTTGGTCCTTCATTATCGATGTCTCCGCCGCTCTTCCTCTTCCTCAGTTTGTGATTTGGTTCGTTATGCCGGCGGTGAAGCA CGCATCGTCTTCCCATGCTCACCATACCGTTTCTGTGATAGTTCTGATTCAATACATTCCTCGGATTGCGGTAATGTTTCCTCTGAATAGAAGGATTGTG AAAAGCACTGGTGTTGTAGCCAAAACCGCCTGGTCTGGAGCTGTCTATAACCTTCTCCTCTATGTTCTTGCCAGTCATGTTCTGGGAGCTTCATGGTACC TGGCGTCGATTCAGCGTCAGCGAAACTGCTGGGAGAGACAATGTGCAAAGGAGAGGAATATAACCCATTCCCCTTCTTGTAAAATCGAGTATCTTGATTG TACAACCAAGAATAATCGTGAACGGCAAGCTTGGTTGAGAATCACCCATCTCATTTCAGCCTGTGATGCTTTCAACGACAAGAGTTTCCAATTTGGAATG TATAAGGATGCATTCATCCATCATGTCGCCGAGGCAACGTTTGCTAATAAGTACTTCTACTGCCTTTGGTTCGGACTAAGAAACTTGAGTTCATATGGGC AAAGTTTGGCGACGAGCACTTACGAAGGCGAGACGATGTTCAGTATAGGGGTATGCATCATGGGACTGGTTCTGTTTGCACATCTAATTGGCAATATGCA GACGTATATGCAATCCACATCAGCTAGGTTGGAGGAATGGAGGATCAGGAGAAGAGATACAGAGGAATGGATGAGGCATCGTCAACTACCGCCGGATTTG CAAGAGAGGATTCGCCGATTTGTTCAATATAAATGGCTAGCAACCAGAGGTGTTGATGAAGAAACCATCTTGAGGGCTCTGCCTCTTGACATCAGACGTC AAATTCAACGGCATCTTTGTCTGGCTCTTGTTAGACGTGTCCCTTTCTTTGCTCAAATGGATGATCAGCTCCTAGACGCGATATGTGAACGTCTAGTTTC ATCCCTGAATACGAAGGATACGTACATTGTACGAGAAGGCGATCCGGTGAACGAGCTGCTGTTCATAATCAGGGGACAGTTAGAAAGCAGCACAACCAAC GGTGGGAGAATAGGGTTTTACAACTCCATCAATCTCAGAGCTGGTGATTTTTGCGGTGAAGAACTGTTGACATGGGCGATAAATCCATCAGCTCGAATGC ACTTGCCTTTATCGACTAGGACAGTGAGGTGCCTGAGCGAAGTGGAGGCGTTCGCACTAAGGGCCGTGGACCTGAAATTCGTGGCGAAGCAGTTCAAACG GCTGCACAGCAAGACACTTCAGCATGCGTTTAGGTATTACTCGCATCAATGGAGGACGTGGGGGGCCTGCTTCATACAGGCAGCATGGAAGAGGTTCAAG CAGAGGAAGCTGCAGCTGGAGTTGGCAAGGCAAGAGAGCTTGTTTTACTCACAATTCGAGGACGGGGAAGGGTACTACAGCGACGAAGGGGATCAGGGGT CATCGTCGGATGATGGTGGGGAAAATGGTCAGCATCTTGGAGCGACATTGCTTGCTTCGAAGTTTGCTGCGAATACAAGGAAAGGAGTAGTGAACCATAA GCTCCCTAGTGGTGATGCCTTGAAAATGCCCAAGTTGTTCAAACCTCAAGAGCCTGATTTCAATGCTGATCATGAGGATCTGTGA
AA sequence Show only first row Show all	>Lus10002363 pacid=23179413 polypeptide=Lus10002363 locus=Lus10002363.g ID=Lus10002363.BGIv1.0 annot-version=v1.0 MDRLHSQAFSSFPPFPPFQPLNFSKTFDLRKKVPWWDHILDPGSELVSKWNHIFLVTCIIGLFVDPLYFFLPVINGDSCLASDTPLGIWVTLARTITDLF FILHVCMKFRTAFVAPSSRVFGRGELVMDPRQIAIRYARSWSFIIDVSAALPLPQFVIWFVMPAVKHASSSHAHHTVSVIVLIQYIPRIAVMFPLNRRIV KSTGVVAKTAWSGAVYNLLLYVLASHVLGASWYLASIQRQRNCWERQCAKERNITHSPSCKIEYLDCTTKNNRERQAWLRITHLISACDAFNDKSFQFGM YKDAFIHHVAEATFANKYFYCLWFGLRNLSSYGQSLATSTYEGETMFSIGVCIMGLVLFAHLIGNMQTYMQSTSARLEEWRIRRRDTEEWMRHRQLPPDL QERIRRFVQYKWLATRGVDEETILRALPLDIRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVSSLNTKDTYIVREGDPVNELLFIIRGQLESSTTN GGRIGFYNSINLRAGDFCGEELLTWAINPSARMHLPLSTRTVRCLSEVEAFALRAVDLKFVAKQFKRLHSKTLQHAFRYYSHQWRTWGACFIQAAWKRFK QRKLQLELARQESLFYSQFEDGEGYYSDEGDQGSSSDDGGENGQHLGATLLASKFAANTRKGVVNHKLPSGDALKMPKLFKPQEPDFNADHEDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	0	1
AT5G58510			unknown protein		Lus10031857 [exp]	3.5	0.7803
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	4.2	0.8035
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	4.9	0.7958
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	8.5	0.8253
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	14.8	0.8166
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	15.6	0.7749
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	20.7	0.7735
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	25.1	0.7761
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	28.0	0.7358
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	33.6	0.7747

Compare expression of checked genes

Lus10002363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.