Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62850 255 / 1e-85 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G10850 219 / 2e-71 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT3G28007 218 / 6e-71 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT1G66770 197 / 1e-62 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G40260 182 / 8e-57 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT4G15920 168 / 2e-51 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT1G21460 157 / 3e-47 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT3G16690 154 / 3e-46 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G53190 140 / 3e-40 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT5G13170 137 / 5e-39 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042131 [exp] 386 / 6e-137 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10034880 [exp] 320 / 4e-111 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 315 / 8e-109 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10017302 [exp] 216 / 5e-70 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 216 / 9e-70 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10032426 [exp] 215 / 2e-69 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10022226 [exp] 202 / 8e-65 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10023047 [exp] 174 / 1e-53 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10015196 [exp] 172 / 2e-51 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074300 [exp] 258 / 9e-87 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 233 / 1e-76 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 216 / 6e-70 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 167 / 6e-51 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 165 / 3e-50 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 164 / 6e-50 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 159 / 8e-48 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 159 / 8e-48 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 159 / 8e-48 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 157 / 3e-47 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10002364 pacid=23179428 polypeptide=Lus10002364 locus=Lus10002364.g ID=Lus10002364.BGIv1.0 annot-version=v1.0 ATGGTGGACATGGAGTTAGCTCGTACTGTTGTTGGGATCATTGGAAACATGATCTCTGTCTTCCTGTTTCTATCCCCGCTGGCGACATTCAGAAGGATTA TAAAGCATAAAGATGTGCACGAGTTTAAACCGGACCCTTACGTGATGACATTCTTAAACTGTGCAATGTGGTGTGTGTATGGCTTGCCATTCGTTAAACC GGATAGCATACTCGTTCTAACTATCAACGGCTTTGGTTTCCTCTTGGAGCTCGTCTACATCGGAATCTTCTTCGTCTTCTCTCCTTGGGTTAAACGGAGA AAGTTGATCATACTATTGCTAGCGGAGGTGTTGTTTTTCGTGGCGGCGGTGCTAGTTACATTTCTGGTGTTCCACACTCCTTCAAAGAGGGCAACCTTCA TCGGGACCCTCTGTATCATCTTCAACATTCTCATGTACGCTTCGCCCTTGACGGCCATGAAAATGGTGATACAGACCAAGAGCGTCAAGTACATGCCATT CTTGCTTTCCTTCGCCGGGTTCTGGAACGGTGTCGTGTGGACAGCGTACGCTCTCTTGAAATTCGACATCAACATTTTGGTGCCGAATGGGTTGGGAACC ATAGCAGCATTGGCACAACTCGTACTCTACGGAATCTACTACAAAACGACAAAGTGGGAGGAGAACGACCATGTTGTTCTCCCCCCACCTCCTCCTAGTA CAGCAGCAATAACCGCTGCTGGCGGGGTCAACTGCTGCTGGCGGGTTGAACCAAGCCGAGTTCTCGGACGTTCAACTCACATCTAG
AA sequence Show only first row Show all	>Lus10002364 pacid=23179428 polypeptide=Lus10002364 locus=Lus10002364.g ID=Lus10002364.BGIv1.0 annot-version=v1.0 MVDMELARTVVGIIGNMISVFLFLSPLATFRRIIKHKDVHEFKPDPYVMTFLNCAMWCVYGLPFVKPDSILVLTINGFGFLLELVYIGIFFVFSPWVKRR KLIILLLAEVLFFVAAVLVTFLVFHTPSKRATFIGTLCIIFNILMYASPLTAMKMVIQTKSVKYMPFLLSFAGFWNGVVWTAYALLKFDINILVPNGLGT IAALAQLVLYGIYYKTTKWEENDHVVLPPPPPSTAAITAAGGVNCCWRVEPSRVLGRSTHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10002364 [exp]	0	1
					Lus10007507 [exp]	4.7	0.9577
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	6.1	0.9695
					Lus10005830 [exp]	8.6	0.9695
					Lus10009618 [exp]	10.5	0.9695
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	12.2	0.9695
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	13.5	0.8683
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	13.6	0.9695
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	14.9	0.9695
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	16.1	0.9695
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	17.2	0.9692

Compare expression of checked genes

Lus10002364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.