Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 241 / 4e-78 MATE efflux family protein (.1) AT4G00350 179 / 1e-53 MATE efflux family protein (.1) AT1G33100 174 / 7e-52 MATE efflux family protein (.1) AT5G10420 171 / 5e-51 MATE efflux family protein (.1) AT1G33110 170 / 1e-50 MATE efflux family protein (.1.2) AT5G65380 170 / 2e-50 MATE efflux family protein (.1) AT1G23300 169 / 4e-50 MATE efflux family protein (.1) AT1G33090 168 / 7e-50 MATE efflux family protein (.1) AT1G61890 167 / 1e-49 MATE efflux family protein (.1) AT3G26590 167 / 2e-49 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042130 [exp] 305 / 8e-103 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 281 / 8e-94 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 186 / 3e-54 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 179 / 6e-54 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10038850 [exp] 178 / 2e-53 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10042343 [exp] 175 / 1e-52 AT1G47530 486 / 8e-170 MATE efflux family protein (.1) Lus10026323 [exp] 174 / 5e-52 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 174 / 6e-52 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10013626 [exp] 171 / 6e-52 AT1G33110 365 / 2e-123 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161200 [exp] 183 / 2e-56 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 176 / 1e-52 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.013G069700 [exp] 174 / 6e-52 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.008G187100 [exp] 173 / 1e-51 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 171 / 7e-51 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.019G063500 [exp] 171 / 8e-51 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 171 / 1e-50 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 169 / 5e-50 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 168 / 8e-50 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 165 / 2e-48 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002365 pacid=23179409 polypeptide=Lus10002365 locus=Lus10002365.g ID=Lus10002365.BGIv1.0 annot-version=v1.0 ATGTTATGCTTGGAGTTTTGGTACTTCATGGTGTTGGTGGTTATCACGGGCCGATTGTCGAATCCTCTGATCCCCGTTGACACCATCTCAATCTGTACGA ACTTAAATGAATGGGACGCCATGATTGCTATTGGATTCACTGCTGCTATATGTGTAAGGGTGTCGAATGAACTGGGAGCAGGAAATGCTCGAGCTGCGAA ACTATCGGTGATAGTGGTGTCAGCTACGTCGATAGTGATCGAGATGATATGTATGGTTTTAGTATTCGCTACGAGAGGTTCTTTCCCTGAGCTCTTCACG AACAGTGAAGCTGTTGCGGAGGAAACGAGGAGACTTGCTACTTTGCTCGCATTTACTGTTCTTCTCAACAGCCTTCAGCCGGTTCTATCTGGTGTTGCTA TTGGAGCCGGATGGCAATCTCTTGTGGCATACATCAATATTGGATGTTACTATATTGTCGGATTGCCTGCTGGGATTCTCCTTGGCTTTACATTCGGCTT CGGGGTTGAGGCTGCAAAAGCTGAGGGTCGAGTTAAGAAATGGGAGGAGGATCATCAACACATTAGGAGTATTGTCGTTAATTCAATACGAGAAATGGTA TACTTGTGA
AA sequence Show only first row Show all	>Lus10002365 pacid=23179409 polypeptide=Lus10002365 locus=Lus10002365.g ID=Lus10002365.BGIv1.0 annot-version=v1.0 MLCLEFWYFMVLVVITGRLSNPLIPVDTISICTNLNEWDAMIAIGFTAAICVRVSNELGAGNARAAKLSVIVVSATSIVIEMICMVLVFATRGSFPELFT NSEAVAEETRRLATLLAFTVLLNSLQPVLSGVAIGAGWQSLVAYINIGCYYIVGLPAGILLGFTFGFGVEAAKAEGRVKKWEEDHQHIRSIVVNSIREMV YL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	1.0	0.9689
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	2.0	0.9593
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	3.9	0.9405
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	4.5	0.9293
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	9.7	0.9078
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	9.9	0.9014
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	13.0	0.8982
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	15.5	0.9070
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	31.4	0.8740
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	32.5	0.8605

Compare expression of checked genes

Lus10002365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.