Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 193 / 1e-59 MATE efflux family protein (.1) AT1G12950 160 / 9e-47 RSH2 root hair specific 2 (.1) AT3G26590 152 / 3e-44 MATE efflux family protein (.1) AT5G38030 149 / 4e-43 MATE efflux family protein (.1) AT1G23300 139 / 5e-39 MATE efflux family protein (.1) AT5G65380 129 / 1e-35 MATE efflux family protein (.1) AT4G25640 127 / 1e-34 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT5G44050 120 / 2e-32 MATE efflux family protein (.1) AT4G00350 115 / 5e-30 MATE efflux family protein (.1) AT5G10420 114 / 5e-30 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002367 [exp] 290 / 4e-102 AT1G47530 191 / 1e-59 MATE efflux family protein (.1) Lus10042130 [exp] 271 / 4e-90 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 186 / 3e-57 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10016296 [exp] 178 / 3e-54 AT1G47530 423 / 4e-145 MATE efflux family protein (.1) Lus10036854 [exp] 150 / 3e-43 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 150 / 7e-43 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 145 / 3e-41 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 142 / 2e-40 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 136 / 8e-38 AT3G26590 675 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132300 [exp] 182 / 4e-59 AT1G47530 196 / 4e-61 MATE efflux family protein (.1) Potri.008G187100 [exp] 160 / 7e-47 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 151 / 1e-43 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 132 / 1e-36 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 129 / 2e-35 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102100 [exp] 127 / 6e-35 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 116 / 2e-30 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 112 / 3e-29 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.013G069700 [exp] 111 / 6e-29 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.013G069600 [exp] 110 / 1e-28 AT3G03620 533 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002366 pacid=23179429 polypeptide=Lus10002366 locus=Lus10002366.g ID=Lus10002366.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTGACTCGCATTCTCAAACCTCTGGGGATTCATCAAGCTCTCTCTCGCCTCTGCCGTCATGTTATGCCGGCTTTCATCACTTCAAATCAA TTCTTTCTTCCTCAATGGAGTCGCCGCTGCTCCTGCAGGAAGAAGAAGCACCAAACAGAAAAGTACTATCCGATTCTTCCTCCGTCGTACGGAACTTCGG AAATGAGTCGAGGTTGCTATGGAAGATTGCAGGCCCTGCTATCTTCACCGCCGTTTCACAGTACTCTTTGGGCGCTCTGACGCAGACTTCCATCGGATTT GTCGGAGAGCTGGAGCTGGCAGCGGTCTCGGTGGAGAACTCCGTCGTCGCCGGCCTCGCCTTTGGCGTCATGCTGGGGATGGGGAGTGCACTGGAAACGC TTTGTGGGCAAGCGTATGGAGCTGAAGAGATAAGGATGTTGGGGATATGCATGCAGAGATCTTGGGTTATTCTCTTAGCCACAGCTTGTCTGTTGGCCCC TGTTTACTTCTGGTCTCCTCCGATCCTCGGTTTCTTCGGTGAAACTGCTTAG
AA sequence Show only first row Show all	>Lus10002366 pacid=23179429 polypeptide=Lus10002366 locus=Lus10002366.g ID=Lus10002366.BGIv1.0 annot-version=v1.0 MASLDSHSQTSGDSSSSLSPLPSCYAGFHHFKSILSSSMESPLLLQEEEAPNRKVLSDSSSVVRNFGNESRLLWKIAGPAIFTAVSQYSLGALTQTSIGF VGELELAAVSVENSVVAGLAFGVMLGMGSALETLCGQAYGAEEIRMLGICMQRSWVILLATACLLAPVYFWSPPILGFFGETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	1.0	0.9689
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	1.4	0.9638
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	15.5	0.8784
AT1G06330			Heavy metal transport/detoxifi...		Lus10001892 [exp]	16.9	0.7562
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	21.3	0.8533
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	23.2	0.8683
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	32.4	0.8398
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	39.6	0.8393
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	41.4	0.7969
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	41.7	0.8318

Compare expression of checked genes

Lus10002366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.