Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 192 / 6e-60 MATE efflux family protein (.1) AT1G12950 159 / 3e-47 RSH2 root hair specific 2 (.1) AT3G26590 152 / 9e-45 MATE efflux family protein (.1) AT5G38030 148 / 3e-43 MATE efflux family protein (.1) AT1G23300 140 / 6e-40 MATE efflux family protein (.1) AT5G65380 130 / 2e-36 MATE efflux family protein (.1) AT4G25640 127 / 3e-35 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT5G44050 120 / 8e-33 MATE efflux family protein (.1) AT4G00350 115 / 1e-30 MATE efflux family protein (.1) AT5G10420 114 / 1e-30 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002366 [exp] 292 / 7e-103 AT1G47530 192 / 2e-59 MATE efflux family protein (.1) Lus10042130 [exp] 270 / 2e-90 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 186 / 2e-57 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10016296 [exp] 178 / 1e-54 AT1G47530 423 / 4e-145 MATE efflux family protein (.1) Lus10006206 [exp] 149 / 2e-43 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 149 / 3e-43 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 145 / 8e-42 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 142 / 5e-41 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 136 / 2e-38 AT3G26590 675 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132300 [exp] 181 / 1e-59 AT1G47530 196 / 4e-61 MATE efflux family protein (.1) Potri.008G187100 [exp] 155 / 7e-46 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 150 / 8e-44 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 133 / 2e-37 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 130 / 2e-36 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102100 [exp] 128 / 9e-36 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 116 / 3e-31 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 112 / 6e-30 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.013G069700 [exp] 112 / 1e-29 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.013G069600 [exp] 110 / 5e-29 AT3G03620 533 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002367 pacid=23179410 polypeptide=Lus10002367 locus=Lus10002367.g ID=Lus10002367.BGIv1.0 annot-version=v1.0 ATGGAGTCGCCGCTGCTCCTGCAGGAAGAAGAAGCACCAAACAGAAAAGTACTATCCGATTCTTCCTCCGTCGTACGGAACTTCGGAAATGAGTCGAGGT TGCTATGGAAGATTGCAGGCCCTGCTATCTTCACCGCCGTTTCACAGTACTCTTTGGGCGCTCTGACGCAGACTTCCATCGGATTTGTCGGAGAGCTGGA GCTGGCAGCGGTCTCGGTGGAGAACTCCGTCGTCGCCGGCCTCGCCTTTGGCGTCATGCTGGGGATGGGGAGTGCACTGGAAACGCTTTGTGGGCAAGCG TATGGAGCTGAAGAGATAAGGATGTTGGGGATATGCATGCAGAGATCTTGGGTTATTCTCTTAGCCACAGCTTGTCTGTTGGCCCCTGTTTACTTCTGGT CTCCTCCGATCCTCGGTTTCTTCGGTGAAACTGCTTAG
AA sequence Show only first row Show all	>Lus10002367 pacid=23179410 polypeptide=Lus10002367 locus=Lus10002367.g ID=Lus10002367.BGIv1.0 annot-version=v1.0 MESPLLLQEEEAPNRKVLSDSSSVVRNFGNESRLLWKIAGPAIFTAVSQYSLGALTQTSIGFVGELELAAVSVENSVVAGLAFGVMLGMGSALETLCGQA YGAEEIRMLGICMQRSWVILLATACLLAPVYFWSPPILGFFGETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	1.4	0.9638
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	2.0	0.9593
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	6.9	0.9001
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	10.0	0.8894
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	14.9	0.8866
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	15.7	0.8873
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036075 [exp]	19.6	0.8456
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	22.2	0.8247
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	23.5	0.8813
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	28.0	0.8368

Compare expression of checked genes

Lus10002367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.