Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47990 250 / 6e-83 SIS3 SUGAR-INSENSITIVE 3 (.1) AT5G66070 71 / 8e-15 RING/U-box superfamily protein (.1.2) AT4G11680 67 / 6e-13 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G18930 66 / 1e-12 RING/U-box superfamily protein (.1.2) AT1G60360 66 / 1e-12 RING/U-box superfamily protein (.1) AT5G57750 65 / 1e-12 RING/U-box superfamily protein (.1) AT2G17730 65 / 1e-12 NIP2 NEP-interacting protein 2 (.1.2) AT2G35910 64 / 2e-12 RING/U-box superfamily protein (.1) AT1G20823 63 / 3e-12 RING/U-box superfamily protein (.1) AT2G17450 62 / 6e-12 RHA3A RING-H2 finger A3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042126 [exp] 402 / 9e-143 AT3G47990 399 / 6e-139 SUGAR-INSENSITIVE 3 (.1) Lus10025612 [exp] 69 / 2e-13 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 68 / 2e-13 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10042443 [exp] 68 / 4e-13 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10013397 [exp] 66 / 2e-12 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10033425 [exp] 64 / 2e-12 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10020258 [exp] 66 / 3e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10025162 [exp] 63 / 3e-12 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10026226 [exp] 65 / 4e-12 AT5G10650 200 / 6e-58 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079600 [exp] 283 / 1e-95 AT3G47990 533 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.015G074900 [exp] 277 / 4e-93 AT3G47990 506 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.004G122000 [exp] 72 / 8e-16 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 68 / 4e-14 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 68 / 3e-13 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 67 / 4e-13 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 67 / 5e-13 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 64 / 6e-13 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 66 / 8e-13 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 65 / 1e-12 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002369 pacid=23179419 polypeptide=Lus10002369 locus=Lus10002369.g ID=Lus10002369.BGIv1.0 annot-version=v1.0 ATGATCCTGGTACCGGATTGGGCATTTGAAGCTGCTGGTCAAGAAATGCGAGTCATGGGTCAAGATACCAATGCGTATCACCCTGGACTTTATTTGACCC CTACTCAGAGAGAAGCTGTTGAGGCACTGATTCAGGAACTTCCAAAGTTCAGACTGAAAGATGTTCCGACCGATTGCAGCGAATGTCCAATCTGCTTAGA AGAGTTTCATGTTGGCAATGAGGTTCGTGGATTGCCCTGCGCACATAATTTCCACGTAGAGTGCATCGATGAGTGGCTCCGATTGAATGTGAAATGCCCT AGGTGCCGCTGCTCTGTGTTCCCGAACCTTGACCTCAGCGCTTTGTCAAACATTCGCTCTGATACAGATAGACCTTCAACAACTGTTGTCTCGGCCACCC GTTACATGAGATCCCAACCTGCAAGCGAAAGCTACCGGCTGCGTTTACAAGGTTTCCTTAGGCCAGTCCGCAGTGGGAACGCTGGACCCCTAACCTCAAC TGAATCAGGCAGTAGCTCGGGGACTGCAGAGAATCGGAATGTCGCAGTAGCTATCGAGGAACCAGCGACAAGAGAACCTGTGATACTGGCTGGACTTGAT GATCCTGTTGGTCAACCAATCCCAGATCACCCCTAA
AA sequence Show only first row Show all	>Lus10002369 pacid=23179419 polypeptide=Lus10002369 locus=Lus10002369.g ID=Lus10002369.BGIv1.0 annot-version=v1.0 MILVPDWAFEAAGQEMRVMGQDTNAYHPGLYLTPTQREAVEALIQELPKFRLKDVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCP RCRCSVFPNLDLSALSNIRSDTDRPSTTVVSATRYMRSQPASESYRLRLQGFLRPVRSGNAGPLTSTESGSSSGTAENRNVAVAIEEPATREPVILAGLD DPVGQPIPDHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	3.3	0.7281
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	6.9	0.7127
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	7.6	0.7235
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	11.3	0.7223
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	19.4	0.7230
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	22.2	0.6997
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	23.7	0.7058
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	24.2	0.6955
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	25.3	0.7152
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	26.6	0.6824

Compare expression of checked genes

Lus10002369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.