Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 162 / 1e-44 Protein of unknown function (DUF3506) (.1) AT4G33630 100 / 3e-23 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042125 [exp] 321 / 1e-105 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10027696 [exp] 181 / 1e-51 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10039967 [exp] 180 / 5e-51 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10020435 [exp] 86 / 4e-18 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10007064 [exp] 86 / 6e-18 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079700 [exp] 177 / 2e-50 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 174 / 3e-49 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.017G043100 [exp] 94 / 7e-21 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10002370 pacid=23179404 polypeptide=Lus10002370 locus=Lus10002370.g ID=Lus10002370.BGIv1.0 annot-version=v1.0 ATGGCCGGAGTAAATCTCTGGTTGGTCGTCGGCCAATCCGCAACTACAGCTACTCAATTGAAGTCTTCCTGTTATTGCCTGGATTCCTCGCCGAAGAAAC CTTTTAACAAGGATTCCACCTTCGTATGTGTATTGGGTTGGAACGGTACTGTTCTTCGTCACACTTTCTCCAAGCCCAGATTCCACAAGACCACCGTAAA CGGCCGCTGTGGCGGCGATAGCATGAACTCGGAAAACACTAGTACTGCTGATGATTGCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGAGTGGGAT TCGAACAGATGGAACTGTCATTTCGCCGAGGTCGATTTTGCTGAGAACTATGCATCTGTTCTCAAGCATGTTTACAGTTTCAACTGGACGAAGCAATTGA AAAGAAAGTTTCAAGTGCATCCTTGTCCACAAATACCTGAGCAATGGAGGTGGAAACTCGCAGCTTTTACAGCTTCAAGAGTTTATGAACTTCTGTCTTC TAATGAAACCAAGATAGTTAGGGCTCCCCCTGGAAGTAAGGGTTACACGAACATGCGCGAATTAGTCCAACTTGGTTTTAGTCAGGCTATGAAGAAAAGT AGGTTATGTGAAGAACATACAAACTTCTCCAGAATTTCGAAAGCTAAGGACAATCTAGACCCATTTGATGGGATATACGTCGGTGATTTCCACCCTCTTG GACTAGAGGTAGTTCAGTTGAGGCGCAAATATGGTCATTGGGACGAAAACTCGTCGGATGCAGATTTCTGCGAGTATGTTGAAGCAGTAAAGCTAACTGG GGATGTCAATGTTCCTGCTGGCCAGGTTGAGAGTTACTCAGGTGAAGGAAGAAAAGCAAACATTGGGTTCAAAAACCCGAAATGGGTCGAAGGGAAACTT CTCATACTGAATGGCAAAGTGAATAAGATACCCGTACCAAATTTCGAACGTGCAGAACTCGGGTTCCTCTTTCTTGGCTCCAAGAGAGAAAGCAACTTGG TGCTGTTGAAACGGTTGACACTACCGGAATAA
AA sequence Show only first row Show all	>Lus10002370 pacid=23179404 polypeptide=Lus10002370 locus=Lus10002370.g ID=Lus10002370.BGIv1.0 annot-version=v1.0 MAGVNLWLVVGQSATTATQLKSSCYCLDSSPKKPFNKDSTFVCVLGWNGTVLRHTFSKPRFHKTTVNGRCGGDSMNSENTSTADDCASSSSSSSSSLEWD SNRWNCHFAEVDFAENYASVLKHVYSFNWTKQLKRKFQVHPCPQIPEQWRWKLAAFTASRVYELLSSNETKIVRAPPGSKGYTNMRELVQLGFSQAMKKS RLCEEHTNFSRISKAKDNLDPFDGIYVGDFHPLGLEVVQLRRKYGHWDENSSDADFCEYVEAVKLTGDVNVPAGQVESYSGEGRKANIGFKNPKWVEGKL LILNGKVNKIPVPNFERAELGFLFLGSKRESNLVLLKRLTLPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	0	1
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	1.7	0.9085
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	4.0	0.8795
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	4.2	0.8983
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	4.5	0.8847
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	4.6	0.8973
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	5.0	0.8812
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	6.5	0.8800
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	7.7	0.8623
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	7.7	0.8812
AT1G64355			unknown protein		Lus10032371 [exp]	8.1	0.8632

Compare expression of checked genes

Lus10002370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.