Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 311 / 1e-106 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 242 / 3e-77 Protein kinase superfamily protein (.1) AT2G24360 231 / 3e-74 Protein kinase superfamily protein (.1) AT4G31170 228 / 5e-73 Protein kinase superfamily protein (.1.2.3.4) AT3G46930 206 / 6e-64 Protein kinase superfamily protein (.1) AT4G38470 202 / 2e-61 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 195 / 5e-59 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 192 / 2e-57 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT5G50000 186 / 9e-57 Protein kinase superfamily protein (.1) AT5G50180 182 / 4e-56 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042122 [exp] 512 / 0 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10000237 [exp] 505 / 0 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020018 [exp] 298 / 1e-100 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 298 / 2e-96 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10025442 [exp] 244 / 1e-78 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10011173 [exp] 241 / 3e-77 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 240 / 9e-77 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10020374 [exp] 230 / 1e-73 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10022653 [exp] 209 / 1e-64 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075200 [exp] 407 / 3e-144 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 403 / 2e-142 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 305 / 1e-103 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 305 / 2e-103 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 258 / 1e-83 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 256 / 1e-82 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 236 / 7e-76 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 234 / 4e-75 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 228 / 4e-73 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 226 / 6e-72 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002374 pacid=23179414 polypeptide=Lus10002374 locus=Lus10002374.g ID=Lus10002374.BGIv1.0 annot-version=v1.0 ATGCAAAAGAACACCATATTGCTCCCTGTAAGAAACCTCGAGTCTGGTTTTCTGACTTCACCAATTCAGTTTGTTGCAGCTTGTAAGAAACCTCCAGTCT TCTGCATCATAACCGAGTACTTGGCGGGAGGCTCATTGAGGAAGTATCTTCATCATCAGGAGCCATACTCCCTTCCGATAAGCCTTGTTCTGAAGCTAGC ATTGGACATTGCCCATGGAATGCAGTACCTTCACTCGCAAGGAATCCTCCACAGGGATCTCAAGTCGGAGAACTTGTTGCTCGACATGGACATGAGCGTA AAGGTGGCCGATTTCGGAATCTCATGCTTGGAATCCCAGTGCGGTAGCGCCAAGGGATTCACCGGCACGTACCGCTGGATGGCTCCCGAGATGATCAAGG AAAAACATCACACCAAGAAGGTCGACGTCTACAGTTTCGGGATAGTTCTATGGGAGCTCTTCACTGCCTTGACTCCTTTCGACAACATGACTCCCGAGCA AGCTGCTTTCGCAGTTTGCCAAAAGAACGCAAGACCACCATTGCCAGGAACGTGTCCAAGGGCATTTGCGCACCTGATAAACCGATGCTGGTCGAGCAAT CCGGGGAAACGACCACATTTCGATGAGATAGTCGCGATTTTGGAGAGCTACTCGGAGTCATTGAGCCAGAACCCTGATTTTTTCGCGAAATACAAGCCGA AACCTGAACTTGGCAGATTAGGGCGCTTTGCAAATTGCGTTAGGAAGAACTAA
AA sequence Show only first row Show all	>Lus10002374 pacid=23179414 polypeptide=Lus10002374 locus=Lus10002374.g ID=Lus10002374.BGIv1.0 annot-version=v1.0 MQKNTILLPVRNLESGFLTSPIQFVAACKKPPVFCIITEYLAGGSLRKYLHHQEPYSLPISLVLKLALDIAHGMQYLHSQGILHRDLKSENLLLDMDMSV KVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELFTALTPFDNMTPEQAAFAVCQKNARPPLPGTCPRAFAHLINRCWSSN PGKRPHFDEIVAILESYSESLSQNPDFFAKYKPKPELGRLGRFANCVRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	0	1
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	3.2	0.8438
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	4.9	0.8065
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	5.5	0.8046
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10028222 [exp]	5.7	0.7814
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	5.8	0.8420
AT1G28100			unknown protein		Lus10001800 [exp]	9.2	0.7807
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	9.9	0.8085
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002373 [exp]	11.0	0.7979
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10034928 [exp]	11.0	0.7737
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	11.4	0.8288

Compare expression of checked genes

Lus10002374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.