Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32175 347 / 3e-122 PNAS-3 related (.1) AT2G25355 343 / 1e-120 PNAS-3 related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042121 [exp] 488 / 1e-177 AT4G32175 345 / 3e-121 PNAS-3 related (.1) Lus10000238 [exp] 311 / 5e-109 AT4G32175 231 / 8e-78 PNAS-3 related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080300 [exp] 420 / 5e-151 AT4G32175 382 / 8e-136 PNAS-3 related (.1) Potri.015G075400 [exp] 113 / 2e-31 AT2G25355 106 / 2e-29 PNAS-3 related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002375 pacid=23179426 polypeptide=Lus10002375 locus=Lus10002375.g ID=Lus10002375.BGIv1.0 annot-version=v1.0 ATGGAAACAAAGCCTTCCACCGGCTCGTCGTCGAGCTTCATCGATCAGTTAGTGGTTCCAGGTGATGTGATTCTTGATCTTTCAAATATGGCTGAGCAAA CTATTAAGCTCGGCGGCGGCCTCCGCCAGGATTGTGATGCCATATCAGTGATCAAAGCTGGGGTGCTGAGGTTCTCCAAGCCAAACAAGTATTGGGTTGA AAGCTCTCAGAAAAGGTATGTGCCGTGTGCTGAGGACTCTGTCCTTGGAGTAGTGGTAGACTCTAAAGCAGACAACTTTCTTGTGGACATAAAAGGACCT TGTTTGGCATATCTACCTGTGCTTGCATTTGAAGGAGGCACCAGAAGGAACATACCCAAGTATGAGGCAGGTACTTTGATTTATGTTCGAGTTGTGAAGG CGAATCCTGGAATGAACCCTGAGCTATCATGTGTTGACGCCACTGGGAAGGCAGCACAATATGGAGCTCTGAAAGAAGGCTTAACGTTTCAGTGTTCAAC TGGTTTATCCAGAATGTTGCTAAGCTCGCCAACATGTCCTGTTCTCGAAACTCTTGGAAAGAAGCTTCCCTTTGAGATAGCAGTAGGGCTAAATGGCGGA GTGTGGGTGAATGCTGATTCTCCATCCATTGTCGTCGTTGTTTCTAATGCAATCATGAATTCAGAGTCTCTGAGTAGGGTGCAGCAGAAGATTATGGCAG AGAAGTTGTTGCAGAGGGTTCAGGGTAATATTCTATTTGATTCTGCTTAA
AA sequence Show only first row Show all	>Lus10002375 pacid=23179426 polypeptide=Lus10002375 locus=Lus10002375.g ID=Lus10002375.BGIv1.0 annot-version=v1.0 METKPSTGSSSSFIDQLVVPGDVILDLSNMAEQTIKLGGGLRQDCDAISVIKAGVLRFSKPNKYWVESSQKRYVPCAEDSVLGVVVDSKADNFLVDIKGP CLAYLPVLAFEGGTRRNIPKYEAGTLIYVRVVKANPGMNPELSCVDATGKAAQYGALKEGLTFQCSTGLSRMLLSSPTCPVLETLGKKLPFEIAVGLNGG VWVNADSPSIVVVVSNAIMNSESLSRVQQKIMAEKLLQRVQGNILFDSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32175			PNAS-3 related (.1)		Lus10002375 [exp]	0	1
AT4G28020			unknown protein		Lus10006992 [exp]	58.8	0.6550
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	101.4	0.6698

Compare expression of checked genes

Lus10002375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.