Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27500 814 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27960 784 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 695 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31240 157 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 50 / 6e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 49 / 2e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 47 / 5e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042120 [exp] 1319 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 739 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 720 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 714 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008786 [exp] 697 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033883 [exp] 140 / 1e-34 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 134 / 9e-33 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020811 [exp] 44 / 0.0005 AT5G37590 405 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 44 / 0.0005 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075300 [exp] 997 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 976 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 811 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 728 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 700 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 643 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 632 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G222900 [exp] 172 / 3e-45 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 52 / 1e-06 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075700 [exp] 48 / 3e-05 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002376 pacid=23179405 polypeptide=Lus10002376 locus=Lus10002376.g ID=Lus10002376.BGIv1.0 annot-version=v1.0 ATGGCGGGAATTGCAATGGAAAGAAACAAGGAGGAAGATGCAGTAGCTGAAATGAATGGAGATGGTGTCCCAGTTAAGGAAACATCCAGCCCTCACAACG CAAGCTTAGATGGTACTGTTAATGGTGTTGTTCATGAGAGCAATGGTGGTGGTGAATCTGCTGCTGCTAATGAGACGGTGGTTGACACCTCAATTGAGCA GCTTTATGAGAATGTGTGTGATATGCAAAGTTCAGATCAGTCACCGTCGAGGCAAAGTTTCGGATCTTATGGCGCAGAGTCGAGGATTGATTCGGAGATA CGCCATCTTCTTGGAGGTGAGATGAAGGAGATTGAGATAATGGAAGAGGAAGTTGATAAGCCTGAGGATGACTCTCATATGAATAACTCTTCTTCTCCTA AGATGGGAAGTCCATCCGCTGCTGGTGAGAAGTCAGAGAAAGGCCTTAACTTGGCATTGGACACTGAAGCATCATCAGTAACGAACGCTCTTTCGGAGAG ACCTCCTCTAGAGAAAAGGAACGGGAAGCCTGCAAAAAGGTTAGGAGTTGCAGCTTTGAGGAAGAGGAAGAAGTCATTGGGGAGTTCAAAGTTGCATAAT GGAGGAGCTGAGGATTCTTCTGAACCTGGACTTAATAATCCGGATCTTGGACGGTTTTTGCTCAAGCAAGCAAGGGATTTGGTTTCTTCAGGGGATAGTT CCCAAAAGGCTCTTGATTTGGCACTTAGAGCGGTTAAAGCATTCGAAAGTTGTGCCGGTGAAGGAAAGCCAAGCCTGGAGTTGGTTATGTCACTTCATGT TGCTGCTGCAATATACTGCAGCATAGGCCAGTATATTGAAGCAATTCCTGTTCTTGAGCAGTCCATTGAGATTCCAGTAATTGCACAGGGCCAAGAGCAT GCTCTTGCCAAGTTTGCTGGCTACATGCAATTGGGCGATACTTACGCAATGCTAGGGCAGCTCGAGAATTCGACAAAGTGTTACACGAAAGGATTAGGGA TCCAGAAACAAGTTCTGGGAGAGAATGACCCCAGAGTTGGCGAAACTTGTAGGTACTTGGCCGAGGCTCATGTTCAAGCACTGCAGTTCGACGAGGCTAA GAATCTCTGCCAGATGGCTCTGGACATTCACAGGGAGAATGGAGCTCCTGCTTCGCTCGAAGAAGCAGCTGATCGCCGGCTGATGGGATTGATATGCGAG ACAAAGGGAGATCATGAAGCTGCTCTTGAGCATCTAGTTTTAGCTAGCATGGCCATGGTGGCTAATGGTCAAGAAGGCGAGGTTGCTAGCGTTGATTGTA GCATCGGAGATGCATACTTATCATTAACTAGGTATGACGAGGCCATTTTCGCGTATCAGAAGGCGCTTACTTCTTTGAAGACAAGGAAAGGAGAGAACCA TCCGGCTGTAGGGTCGGTTTTCGTGCGCCTGGCTGATTTGTACAATAAAACCGGGAAGTTGAAAGAAGCTAAATCTTATTGCGAAAATGGGTTACGGATT TACGAGAAACCTGCCCCCGGGATCCCTCCGGAGGAGATTGCTAGTGGTCTTACTGACATTTCTGCCATTTATGAATCCATGAATGAGCTCGAGCAAGCGA TCAAGTTGCTAGAGAAAGCCTTGAAGATGTACAATGATGCTCCTGGCCAGCAAAGCACGGTTGCTGGAATTGAAGCACAAATGGGTGTCCTTTACTACAT GATGGGGAATTACTCTGATTCCTACGATTCCTTCAAGAGTGCGGTTGCGAAACTGAGGACGAGTGGAGAGAAGAAATCTGCTTTCTTTGGCATTGCTCTT AATCAGATGGGTCTCACTTGTGTCCAAAGGTTTGCCATAAATGAGGCTGTGGAATTGTTTGAGGAAGCTAAGGTTGTTTTGGAACAAGAATGTGGACCAG ACCATCCTGATACCCTTGGAGTCTATAGCAACCTTGCTGGTACCTATGATGCAATGGGGAGGCTGGACGAAGCGATCAAGGTATTGGAACACGTTGTTCA AGTGCGAGAGGATAAGCTCGGGACAGCAAACCCGGATGTTGTTGATGAGAAGAAGAGGCTAGGGGAGCTGCTGAAAGAAGCAGGAAGAGTAAGGAGCAGG AAAGCCAGGTCTCTAGAGAACCTTCTTGATAATAACACAAACAAAGATGTCATTACCTTACAGTAA
AA sequence Show only first row Show all	>Lus10002376 pacid=23179405 polypeptide=Lus10002376 locus=Lus10002376.g ID=Lus10002376.BGIv1.0 annot-version=v1.0 MAGIAMERNKEEDAVAEMNGDGVPVKETSSPHNASLDGTVNGVVHESNGGGESAAANETVVDTSIEQLYENVCDMQSSDQSPSRQSFGSYGAESRIDSEI RHLLGGEMKEIEIMEEEVDKPEDDSHMNNSSSPKMGSPSAAGEKSEKGLNLALDTEASSVTNALSERPPLEKRNGKPAKRLGVAALRKRKKSLGSSKLHN GGAEDSSEPGLNNPDLGRFLLKQARDLVSSGDSSQKALDLALRAVKAFESCAGEGKPSLELVMSLHVAAAIYCSIGQYIEAIPVLEQSIEIPVIAQGQEH ALAKFAGYMQLGDTYAMLGQLENSTKCYTKGLGIQKQVLGENDPRVGETCRYLAEAHVQALQFDEAKNLCQMALDIHRENGAPASLEEAADRRLMGLICE TKGDHEAALEHLVLASMAMVANGQEGEVASVDCSIGDAYLSLTRYDEAIFAYQKALTSLKTRKGENHPAVGSVFVRLADLYNKTGKLKEAKSYCENGLRI YEKPAPGIPPEEIASGLTDISAIYESMNELEQAIKLLEKALKMYNDAPGQQSTVAGIEAQMGVLYYMMGNYSDSYDSFKSAVAKLRTSGEKKSAFFGIAL NQMGLTCVQRFAINEAVELFEEAKVVLEQECGPDHPDTLGVYSNLAGTYDAMGRLDEAIKVLEHVVQVREDKLGTANPDVVDEKKRLGELLKEAGRVRSR KARSLENLLDNNTNKDVITLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	0	1
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	2.4	0.9455
AT1G48780			unknown protein		Lus10009633 [exp]	3.0	0.9337
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10042120 [exp]	4.0	0.9232
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	5.2	0.9427
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	5.3	0.9092
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	6.5	0.9428
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	10.6	0.9424
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	11.4	0.9388
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	12.4	0.9349
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001053 [exp]	16.4	0.8798

Compare expression of checked genes

Lus10002376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.