Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 189 / 3e-56 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042119 [exp] 320 / 8e-108 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10027672 [exp] 248 / 1e-78 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039936 [exp] 219 / 2e-70 AT5G62810 208 / 3e-64 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080800 [exp] 213 / 3e-65 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Potri.015G076100 [exp] 204 / 7e-62 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [flax] [poplar] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002377 pacid=23179418 polypeptide=Lus10002377 locus=Lus10002377.g ID=Lus10002377.BGIv1.0 annot-version=v1.0 ATGGAGATGATAAAGCCCAACAAGTTTCCTATCCTCATCACAGTCTTTCATGGCCATTGCCAGCGTGGCACCGTTACGCTCACACCTCGGGATGAGGAAA AACCTGGGTTAACCAACAACCCCACCTTACCACTTGTAATCCGTCACCGGAGTTTCCTTGCTGTTCGTCAGGAGCTGAGACTTTTTTTTCCTTTATTCAG TCAACCGGAGGTTGTAACAATGGCGACTAATAAGTCCTCCTCGTCACCTACCGATCCTCTTGCCACCGGTGGAAGTCCTCAGAATTCAGCTACTGAAGCT GTGCAACCAACAAATGAAATTAAGCAAGACATGAAACCTGAGATGGCTCCACAAAATCCCAAGTCTGTCTTTGTGAGTTCAGAACCAATACGAGAAGACC AGGTTGAAAATGCTGTGAAATTTCTTTCTCACCCAAAAGTGAGGGATTCTCCAGTTATCCACAGAAGAAATTTTCTTGAGAAGAAGGGGCTTACTAAAGA AGAGATAGACGAAGCTTTTCGGCGTGTTCCAGATCCGTCCCCGAGCGCTCAGTCAACTGGTACCAATCAGGCAGGCAAGGGAATATCAACCTCAACTATT CAACCAGCAGCTGTCGTGCAAACCCCAGCCGTTCCTCCTAGTGGGAGCTCATCAATTGTGACTGTGGCTCGTTCTCGAATTTATTGGTATCATATCGTAT CTGCTGTTGGATTGCTGGCAATTTCTGGTGCTGGAACGGCTATATGGGTTAAGAAGTCCATGATTCCACGGCTAAAATCTTGGATACGTAGGGTGGTTCT GGAAGAAAAAGAAGCTGATGAGAATAAAACTAGTGGCCGACCAACATGGGCTGAGGAAGCTGCAGCAGCTGCAAAATCGGCGCAAGCAAGGAAATGA
AA sequence Show only first row Show all	>Lus10002377 pacid=23179418 polypeptide=Lus10002377 locus=Lus10002377.g ID=Lus10002377.BGIv1.0 annot-version=v1.0 MEMIKPNKFPILITVFHGHCQRGTVTLTPRDEEKPGLTNNPTLPLVIRHRSFLAVRQELRLFFPLFSQPEVVTMATNKSSSSPTDPLATGGSPQNSATEA VQPTNEIKQDMKPEMAPQNPKSVFVSSEPIREDQVENAVKFLSHPKVRDSPVIHRRNFLEKKGLTKEEIDEAFRRVPDPSPSAQSTGTNQAGKGISTSTI QPAAVVQTPAVPPSGSSSIVTVARSRIYWYHIVSAVGLLAISGAGTAIWVKKSMIPRLKSWIRRVVLEEKEADENKTSGRPTWAEEAAAAAKSAQARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002377 [exp]	0	1
AT1G04200			unknown protein		Lus10039377 [exp]	8.1	0.7294
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10038043 [exp]	8.7	0.7144
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	16.6	0.6735
AT5G16520			unknown protein		Lus10000439 [exp]	17.9	0.6680
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	50.8	0.6433
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	70.3	0.6388
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	77.7	0.6154
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	100.2	0.6154
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10008122 [exp]	105.3	0.5891
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10032653 [exp]	109.5	0.5626

Compare expression of checked genes

Lus10002377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.