Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62790 737 / 0 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042118 [exp] 872 / 0 AT5G62790 787 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080900 [exp] 764 / 0 AT5G62790 828 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2) Potri.015G076200 [exp] 757 / 0 AT5G62790 812 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF08436 [flax] [poplar] DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02670 [flax] [poplar] DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Representative CDS sequence Show only first row Show all	>Lus10002379 pacid=23179416 polypeptide=Lus10002379 locus=Lus10002379.g ID=Lus10002379.BGIv1.0 annot-version=v1.0 ATGTCTCTGAATATGCTGTCTCCTGCTGAGGTCAAGTCCATCTCTTTCTTGGACACCTCCAAATCCTTCCACTCTCATGCCCTCCCCAAACTCCCAGGTG GGTTCAGTGTGAAGAAAAAGAGCAGTGCTTTGAGTTTGAGAAGAATCCAATGTTCAGTTCAGCAATCTCAGCAGCCTCCTTCAGCTTGGCCTGGGACGGC TATTCCCGAGCCAGGCCGTAAAATCTGGGATGGTCCCAAACCAATCTCCATCGTTGGTTCCACTGGCTCAATTGGAACTCAGACGTTGGATATAGTGTCG GAGAATCCGGATAAGTTCAAGGTTGTTGCTTTGGCAGCCGGTTCAAATATCGCACTTCTGGCTGATCAGATCAGAACATTCAAGCCCCAGCTGGTTTCTG TCAAGAACGAGTCTTTAGCTAAGGAGTTAAAGGAGGCTTTGGCTGGTCTTGAAGTGATGCCTGAGATCATCCCTGGAGAGGAAGGGATTGTTGAGGTTGC TCGCCACCCAGATGCTGCTACTGTGGTTACAGGAATAGTTGGATGTGCTGGGCTCAAGCCTACAGTGGCTGCTATTGAAGCAGGGAAAGACATAGCTTTG GCTAATAAGGAGACCTTAATTGCTGGAGGTCCATTTGTCCTCCCCCTTGCTCACAAGCACAAAGTCAAAATCTTGCCTGCTGATTCCGAGCATTCTGCCA TATTCCAGTGTATTCAGGGTCTACCGGAAGGTGCACTACGACGCATTATTCTAACAGCCTCTGGTGGTTCTTTCAGGGATCTACCTGTTGAGAAATTGAA GGATGTTAAAGTAGCTGATGCACTAAAGCACCCAAACTGGAGCATGGGGAAAAAGATCACTGTGGACTCTGCAACTTTGTTCAATAAGGGACTTGAGGTC ATTGAAGCTCACTATTTGTTCGGAGCTGATTATGACAACATTGACATTGTCATTCACCCACAGTCCATCATACATTCCATGATTGAAACACAGGATTCAT CTGTTCTTGCCCAATTGGGGTGGCCTGACATGCGCTTGCCGATTCTCTACACAATGTCCTGGCCAGACCGAGTTCCCTGTTCCGAAGTAACTTGGCCTCG TCTCGACCTTTGCAAGCTGGGTTCGCTAACATTCAGAGCTCCGGACAATGTGAAGTACCCATCCATGAACCTTGCTTATGCTGCGGGGCGAGCAGGAGGT ACCATGACAGGAGTCCTGAGCGCTGCTAATGAGAAAGCCGTCGAGTTGTTCATTGACGAGAAGATTGCATACCTAGATATCTTCAAGATAGTGGAGTTAA CATGCGCCAAGCACAGAGAGGAATTAGTGACGTCACCTTCCCTGGAAGAGATCATACATTACGACTTGTGGGCAAGAGATTATGCTGCTAGTTTGCAACA GGCTCATGGCCTCAGTCCAGCTCTCGTTTGA
AA sequence Show only first row Show all	>Lus10002379 pacid=23179416 polypeptide=Lus10002379 locus=Lus10002379.g ID=Lus10002379.BGIv1.0 annot-version=v1.0 MSLNMLSPAEVKSISFLDTSKSFHSHALPKLPGGFSVKKKSSALSLRRIQCSVQQSQQPPSAWPGTAIPEPGRKIWDGPKPISIVGSTGSIGTQTLDIVS ENPDKFKVVALAAGSNIALLADQIRTFKPQLVSVKNESLAKELKEALAGLEVMPEIIPGEEGIVEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIAL ANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGSFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEV IEAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPDRVPCSEVTWPRLDLCKLGSLTFRAPDNVKYPSMNLAYAAGRAGG TMTGVLSAANEKAVELFIDEKIAYLDIFKIVELTCAKHREELVTSPSLEEIIHYDLWARDYAASLQQAHGLSPALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	1.4	0.9822
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	2.0	0.9763
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	3.5	0.9765
AT2G18210			unknown protein		Lus10028324 [exp]	3.5	0.9774
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	3.9	0.9754
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	7.2	0.9603
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	7.7	0.9693
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	8.4	0.9723
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	9.7	0.9620
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	9.8	0.9596

Compare expression of checked genes

Lus10002379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.