Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70420 59 / 3e-10 Protein of unknown function (DUF1645) (.1) AT1G23710 54 / 2e-08 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042116 [exp] 146 / 1e-43 AT1G70420 61 / 2e-11 Protein of unknown function (DUF1645) (.1) Lus10030612 [exp] 47 / 7e-06 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10030876 [exp] 46 / 1e-05 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10029153 [exp] 45 / 3e-05 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10013011 [exp] 44 / 9e-05 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081000 [exp] 91 / 4e-21 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 83 / 3e-18 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 45 / 1e-05 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 43 / 8e-05 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 42 / 0.0002 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10002380 pacid=23179421 polypeptide=Lus10002380 locus=Lus10002380.g ID=Lus10002380.BGIv1.0 annot-version=v1.0 ATGCCGCAAGAGCAACAGTACCCCGCCTCTCTCCTCGCTGCTTCCCCAATTTCTCCAAGCTTCAACTCTTACTACACCTCCTACTCCTCCGACGACGAGA CCCTCGCCGACATCGCCGCCCGAGTCGTCCAGGAGCTCTCCGGCGACTCCGAATTTTACTCCTGGGAAGATGAAGAATCAGTTGACCTAGAACAACAACA ACATGACGAGGAAGAAGAAGCAAAAGAAATCATCCAAACGACAGCGTATGGCAGGGATGATGAGTCTAACAGAGACCAATCTTCCAGCGACGACGACGAA GAAGAAGAAGAAGGAGAGTTCGAGTTCGCAGTCGTGGACAGAGAGGCCGTGACGTCACCGATTTCAGCTGACGAGATCTTCTACAACGGTCAGATCAGGC CTCTCTACCCCTTGTTCAACACCGATTTGCTGCTGGACGGCCCTCAATTCCAATCCTTCAAGTCTAATTTGAATAACAAATCGACACCGCCACCAGCTGC AGCCGCCGCAGCGGGGGGACGGAAAGTAGTTCGGAGGCAGCCGCTTATGAAGCTATTCCGAGAAGAAGAGCGTGAAGGCGGAGACGATAGTAGCTCGGAG GATGAATTGGATAGCGTCCCGGAAGGGACGTACTGCGTGTGGAAACCTAAGAAGGAGGAGTCCTCACCGGAGATCTGCAAGAAGAAGAGCAGCTCCGAGG GAATGAAAGTAAGAAACGTGCGTCGTTTCGGCCGATACGGCAGGACCTGGTTGGCGTGTTGGCCAACGTTAGCGGCGTTAGCCGGAATCTTCACCCCTTT TGAGCAGTAA
AA sequence Show only first row Show all	>Lus10002380 pacid=23179421 polypeptide=Lus10002380 locus=Lus10002380.g ID=Lus10002380.BGIv1.0 annot-version=v1.0 MPQEQQYPASLLAASPISPSFNSYYTSYSSDDETLADIAARVVQELSGDSEFYSWEDEESVDLEQQQHDEEEEAKEIIQTTAYGRDDESNRDQSSSDDDE EEEEGEFEFAVVDREAVTSPISADEIFYNGQIRPLYPLFNTDLLLDGPQFQSFKSNLNNKSTPPPAAAAAAGGRKVVRRQPLMKLFREEEREGGDDSSSE DELDSVPEGTYCVWKPKKEESSPEICKKKSSSEGMKVRNVRRFGRYGRTWLACWPTLAALAGIFTPFEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	0	1
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	1.4	0.9684
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	2.4	0.9587
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	3.7	0.9715
AT1G70420			Protein of unknown function (D...		Lus10042116 [exp]	4.4	0.9539
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	7.1	0.9623
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	8.3	0.9335
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10036639 [exp]	9.9	0.9582
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	11.3	0.9598
AT3G16070			unknown protein		Lus10034910 [exp]	12.8	0.9559
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	13.0	0.9549

Compare expression of checked genes

Lus10002380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.