Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62940 154 / 9e-44 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 121 / 2e-31 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 119 / 2e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G24060 119 / 7e-31 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 115 / 3e-29 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT2G28810 114 / 7e-29 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 114 / 8e-29 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G45610 112 / 8e-29 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G02460 113 / 4e-28 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 111 / 4e-28 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042114 [exp] 231 / 8e-77 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10042115 [exp] 224 / 8e-73 ND / Lus10016566 [exp] 117 / 6e-30 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 115 / 5e-29 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10014002 [exp] 111 / 8e-29 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10015425 [exp] 112 / 1e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10029458 [exp] 113 / 2e-28 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 111 / 3e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10005956 [exp] 112 / 4e-28 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081300 [exp] 190 / 4e-58 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 169 / 6e-50 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 128 / 9e-35 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 127 / 3e-34 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 125 / 1e-33 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 124 / 5e-33 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.007G058200 [exp] 120 / 5e-31 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G149100 [exp] 117 / 3e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 117 / 4e-30 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.015G048300 [exp] 117 / 5e-30 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10002381 pacid=23179406 polypeptide=Lus10002381 locus=Lus10002381.g ID=Lus10002381.BGIv1.0 annot-version=v1.0 ATGGGCCTTACTTCTCTCCAAGTCTGCATGGATTCACCCGCTGACTGGTTGCTCCAGGGGACGACAATGGTGGATGACGTCGAGTCCGGACTGCTCGACC CCTCCAACGGTGGGGACATGTTGATGGTTGCCTGCTCCAGACAGCCAGCAGCAATGATGGAGAGGCGGTTGAGGCCGCCTCAGGACCAAGCACTGAAATG CCCTCGGTGCGAGTCTACCCACACCAAATTCTGTTACTACAACAACTACAGCCTCACCCAGCCTCGCTACTTCTGCAAGACCTGCCGCAGGTACTGGACC AAAGGCGGCACCTTACGAAACATCCCGGTGGGGGGTGGCTGCCGCAAGTCGTCGTCCAAGAAATCCAACAGTAACAAAAACAAGTCGATTTTAACCTCCG CTTCCTCCTCGTTGACCTCCTCGCCCACGTCATCACCTTCCCCGGCTCATCATCACCAACTACTTCATGGCCACCACTTCAACTCCTTGCTTGGGAACAT GGTGCTTGAGAATCGGGCTCCACCGGTAGATTTTATGGAGGGCAAGTTGGAAGGGTTAGGTGGAGGGCTAAGTGGTAATTACAACTATGACTTTGTCATG GGAAATGGTGGTAGTAGTTTTAACGACCACGGAGGAGTTAGTGTAGGCGGCTTAGGAGGACGAGGAGGGCAAAGTGGTCATTTTCATGGGCTGTCTTCTA ATTTGAGCATTATGGAGAGCTGTCAAAGGTTAATGCTGCCGTACGAAGCAAGTGAGGATCGTACTATCGGCGATGTGAAGCCTGCAGCCGCCAAGCTCTT GTCGCTTGACAGCTGGCAAGACCACCACCATCACCACCACGGAGGCGGCGGTATTAATGTTGTCGGTAAAGAAAGCGGGTTTGGATATTTCAACAACTCC ATGAACGGTACTTTATTAGACCAGTCATGGATTAACAACGAGGTTAGTACTTCTAATCAACATCATCACGCGATGATGAACGGTGGTTATAATGGATCTG GTTCCGCCACGTCATCATCCATGCTCCACAACAATTGA
AA sequence Show only first row Show all	>Lus10002381 pacid=23179406 polypeptide=Lus10002381 locus=Lus10002381.g ID=Lus10002381.BGIv1.0 annot-version=v1.0 MGLTSLQVCMDSPADWLLQGTTMVDDVESGLLDPSNGGDMLMVACSRQPAAMMERRLRPPQDQALKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWT KGGTLRNIPVGGGCRKSSSKKSNSNKNKSILTSASSSLTSSPTSSPSPAHHHQLLHGHHFNSLLGNMVLENRAPPVDFMEGKLEGLGGGLSGNYNYDFVM GNGGSSFNDHGGVSVGGLGGRGGQSGHFHGLSSNLSIMESCQRLMLPYEASEDRTIGDVKPAAAKLLSLDSWQDHHHHHHGGGGINVVGKESGFGYFNNS MNGTLLDQSWINNEVSTSNQHHHAMMNGGYNGSGSATSSSMLHNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	0	1
AT1G68430			unknown protein		Lus10003042 [exp]	1.7	0.9297
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10028704 [exp]	3.3	0.8633
AT1G69160			unknown protein		Lus10036813 [exp]	4.0	0.8771
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	4.5	0.8681
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	4.5	0.9155
AT1G68430			unknown protein		Lus10034103 [exp]	5.7	0.9006
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	7.1	0.8850
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	9.4	0.7582
					Lus10042115 [exp]	11.5	0.7314
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	11.8	0.8825

Compare expression of checked genes

Lus10002381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.