Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48190 117 / 3e-26 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40340 81 / 5e-15 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 76 / 1e-13 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G27860 62 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1) AT5G02950 60 / 9e-09 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 59 / 2e-08 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 50 / 7e-06 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042113 [exp] 1727 / 0 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10032141 [exp] 93 / 6e-19 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 90 / 5e-18 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 86 / 7e-17 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10016267 [exp] 82 / 2e-15 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 77 / 6e-14 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 73 / 1e-12 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 62 / 3e-09 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 59 / 2e-08 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081500 [exp] 180 / 5e-46 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G130600 [exp] 107 / 2e-23 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 90 / 6e-18 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 89 / 1e-17 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 80 / 5e-15 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 76 / 1e-13 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.005G026800 [exp] 60 / 8e-09 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 57 / 5e-08 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10002382 pacid=23179424 polypeptide=Lus10002382 locus=Lus10002382.g ID=Lus10002382.BGIv1.0 annot-version=v1.0 ATGGAGGATTCTAAACCCCTAGAGGCTGAGAAACCAGATGGTAAAACCCTAGAAGATGGGAACTTTGAGGCTATGGAGTTGGATCAAAGCTCTGATAAGA ACTTATGTGTTGGTCTAGAGCACGAGTCTGAGATTGTGGTAGAAGATAACGGTCAATTGGTTAACGAGGGAATTGAAAATGGTCAAGATGAGGGCAATGT AGGTTCATCGGTCGAGACCCGAATGGTTAATGATGCTGTCGGTCTCGGGAAGGTAGCTTCTTTAAGTAGTGATGGAAATGGGGAAGCTGAGAGTGAGGAA TGTTTGAAGGGGAGAAAATTGGACGGAAATTTTGCGAATTTGGTCGAAGAAGCAGCGGTGGAGAACATGGTTGCCGACATTGATACTGTCGATGCCGAGT CTGAGACCCTGGCAGAAGATAACGGTCAATTGGTCAATGCGAGATTCGAAAATGGTCAGGATGAGGGCAATGTAGGTTCATTGGTGGAGGTCCCAATGGT TAATGATGTTGTCGAACTCGGAAAGTTCTCTTTTTTGAGTAATGATGGTAATGGGGAAGCTGAGAGTGAGGAATGTTTAAAGGGGAGAGAAGTGCAGGAC GAAATGTTTGCGAATTTGGTCAAAGAAGCAGCGGTAGAGAACATGGTTACAGACATTGATACTGTCGATACCGATGATCAGGGTATAAATCTTTCAGGAG ATGACATATCACTCTATGTAGAGCTGTCCCGTCCAGTTGATGGAGCTGGCAATGGCGGTGGAGATAACATGGATTCTGTTGATTCGAATAATGACAAGTC CGGTGAGACAATTGGAGGGAAGTTCTGTCTCGGGGATGTTGTCTGGCTTAGAACAAAAAGTGAGTCATGGTGGCCAGGGCAGGTTTGTGGTCTGTCGACT TGTCCCGAAGATGGTTACAAGGTTAACTGCCATATAGTTCAGCACTTTGGTAATCATCATGTTGCTTGGTGCCCACCTTCCAAGCTGAGAGATTTCAGCG AGTATTTCGATCAGATAGTAGGAGAAAATAACAAGGGTAAAGGCTTCCTTGGAGTGGTGGAGAAGGCCATCGATGCGTTTGTTAAACGTTTGAAATCGGA GATGACCTGTTCTTGTATGCTCAAGCATGGCTGCTGCAGTGATAAGAACTCAATGGCCATAGTCGAAGAGCGCGATAATAATGATTCACAAGATGGTAAA TCTGTGACGACATTTGAGCCGGGGGCATTTCTTTCTCAGGTTAAACAACTAGCAGTTGCGGTCTGGAAACCTTCACTGCTCGAGTTGGCTGTTGCCAAGA GTCGTGTGGAAGCATTTTCTTGTTCTAGAGGACACCTGCAGCTGCCACTTAGCGAATTGTCAGACCCCGATCAGAAGGGGAATCGAGATCCTACGCGAAA AAGGAAATTGAAACAGTTCTTGAGAGAAGTTCTTAATGATTCGGCAACAGTGAAGGAGGAGGCTGGAAACTCGGATTCTCCAATGGAGGATAAAAGCTTT GACTTGAGAGAAAGAAAGAGGAGCAAGTATTTATCATATCCTTATGTGAATATAGGACAGAAGAACTACAAGCCTGCAAGTGAAAAGGAACAAGTTAAGG GTAAAGACCTGGAAGTTCAGAAAGGAACTTCTAAATCTGCTGGAAATAAAGGGTTCCAAAAACGCTGGTTTGAAAAGTTCATCGACGACACAGCTGTATC AAGCAAGCCTGAGTTTCTCAGTTCATCCGTTGCTGGTTTGTTGTCCGAGCTGTCTCGTACATCGGTGGATTGCTTGCATCGAAGCAAGAGCGTGGATTTC GAAGTAGTTGAGTGTTTTTTCTCGAGGTTCAGAATGTCAGCATTTCATGATGAGTCCATTTACGAGAGGCATTTCAAGAACACCATTGGATGTAGTAGTG ATGCTGCTACTGAAGCACCTGAGGAGAAATATGCTGGAGTTTCAAGCCTGGTTTCGAAAACTGCGCAGAAGAAGGTATGGAAGACTAAGAAATCTGGAGA TGATTCAGCTACTACCCCAAAGACCAAACCTGAAAAAGGGTCGCCAGATGGATGTAATGCTGCTGCTGAGCCTGCAAGCCAGGTTTTGCAAACTGCGCCA AAGATATGGAAGACGAGTAAGAAATCTGGAAATTCAGCTGTCCGAAAGACCAAACCTGAAAAAGGGTCATCGGATGGAACTAAAATCAAGAATGACAGCA GTACAGACCGGTCGACCTCGAAAGTAGCAGAGATGAATGGTAGTCTTGGGTGTAACTCTACAACTCCTCCTCCAAGTGCACAGATTCTGAAACAGGTTGC TTCGGAAGTTAAACTGACTCCAATGAAGATACATGACAAAGCAGCAACCTTTCCAGTTATGAAAGGAGATCATTCGGAACCAGGTACAGTTTGTTCACAC ACGTTTTCTCCAAATTCCATCCTTGGAGAAGGCAATATGACAGGCTTAACCGCCGCCATACCAAACACAAACGGTAGTGTCACAACAGATGGTAAGCTGA AGGAGAATCCAACTCCGGGACAGGTGAATCCAGCTCCGGAACAGGCTTCGGAACAGGCTTGTCCTGGTGCTGGCGTTCTGGATGTAAACACAGGAGTTGC TGCTGCTGAAAATGGCACTTTTTCTACGAATTCTGGGGTGAAGAGGGGCAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGGGAAGAGGAGGTAATCCA GAGAGACCGAAAAAGAAACCTTCTTTCAGCAATGCATATTATTATATGGGGAAATGGATGGACATACAAGCTTCAGGCACTGTTAGACATCAAACATTTG CTCCGACAGAAACTCCATCCGATGCGTCTTCTGGGGTTGGGAACTCGAAAGGGTCGCAGCAAAACGATGGCTCTGAGAAAACGAGCAATGAGTTTCGGTC AGTTCCAGCTGCCTCAACACCTGAAATAAGGGAAGGTATAGCACCTAATAATAATGCAGCAGCGGCACCTCCGATGCACATAATAAGGAAGAATCTTGAG AGGATGACGTCAATGCTGCAGGATGCTGGAGATAGTCTTTCTCCTGAGATGAGGAGCATGCTGGAAACTGAAATAAACGGCCTCTTGAAAAAGGTGAGCT CTTCTGCTCCCACCAAGCCTTCCTCATAA
AA sequence Show only first row Show all	>Lus10002382 pacid=23179424 polypeptide=Lus10002382 locus=Lus10002382.g ID=Lus10002382.BGIv1.0 annot-version=v1.0 MEDSKPLEAEKPDGKTLEDGNFEAMELDQSSDKNLCVGLEHESEIVVEDNGQLVNEGIENGQDEGNVGSSVETRMVNDAVGLGKVASLSSDGNGEAESEE CLKGRKLDGNFANLVEEAAVENMVADIDTVDAESETLAEDNGQLVNARFENGQDEGNVGSLVEVPMVNDVVELGKFSFLSNDGNGEAESEECLKGREVQD EMFANLVKEAAVENMVTDIDTVDTDDQGINLSGDDISLYVELSRPVDGAGNGGGDNMDSVDSNNDKSGETIGGKFCLGDVVWLRTKSESWWPGQVCGLST CPEDGYKVNCHIVQHFGNHHVAWCPPSKLRDFSEYFDQIVGENNKGKGFLGVVEKAIDAFVKRLKSEMTCSCMLKHGCCSDKNSMAIVEERDNNDSQDGK SVTTFEPGAFLSQVKQLAVAVWKPSLLELAVAKSRVEAFSCSRGHLQLPLSELSDPDQKGNRDPTRKRKLKQFLREVLNDSATVKEEAGNSDSPMEDKSF DLRERKRSKYLSYPYVNIGQKNYKPASEKEQVKGKDLEVQKGTSKSAGNKGFQKRWFEKFIDDTAVSSKPEFLSSSVAGLLSELSRTSVDCLHRSKSVDF EVVECFFSRFRMSAFHDESIYERHFKNTIGCSSDAATEAPEEKYAGVSSLVSKTAQKKVWKTKKSGDDSATTPKTKPEKGSPDGCNAAAEPASQVLQTAP KIWKTSKKSGNSAVRKTKPEKGSSDGTKIKNDSSTDRSTSKVAEMNGSLGCNSTTPPPSAQILKQVASEVKLTPMKIHDKAATFPVMKGDHSEPGTVCSH TFSPNSILGEGNMTGLTAAIPNTNGSVTTDGKLKENPTPGQVNPAPEQASEQACPGAGVLDVNTGVAAAENGTFSTNSGVKRGRGRGRGRGRGRGRGGNP ERPKKKPSFSNAYYYMGKWMDIQASGTVRHQTFAPTETPSDASSGVGNSKGSQQNDGSEKTSNEFRSVPAASTPEIREGIAPNNNAAAAPPMHIIRKNLE RMTSMLQDAGDSLSPEMRSMLETEINGLLKKVSSSAPTKPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	0	1
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	4.2	0.7927
AT4G02720			unknown protein		Lus10022052 [exp]	4.5	0.8455
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	5.3	0.8053
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10036812 [exp]	6.3	0.7880
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	8.4	0.7941
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	8.9	0.7673
AT1G31240			Bromodomain transcription fact...		Lus10018295 [exp]	14.7	0.7215
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	16.6	0.7208
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	17.9	0.7457
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	18.0	0.7560

Compare expression of checked genes

Lus10002382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.