Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22220 256 / 1e-88 ATISU1, ISU1 SufE/NifU family protein (.1) AT4G04080 228 / 2e-77 ISU3, ATISU3 ISCU-like 3 (.1) AT3G01020 209 / 6e-70 ISU2, ATISU2 ISCU-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042112 [exp] 302 / 2e-106 AT4G22220 261 / 3e-90 SufE/NifU family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081700 [exp] 263 / 3e-91 AT4G22220 253 / 2e-87 SufE/NifU family protein (.1) Potri.015G077500 [exp] 263 / 3e-91 AT4G22220 248 / 3e-85 SufE/NifU family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [flax] [poplar] SufE_NifU PF01592 [flax] [poplar] NifU_N NifU-like N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002383 pacid=23179427 polypeptide=Lus10002383 locus=Lus10002383.g ID=Lus10002383.BGIv1.0 annot-version=v1.0 ATGCTCAGGCTAGCGACGAACAGGATCTTGGCCCGTGCAGCAGCGGCGAAGGCTCCGCAGCAGCAAGCCCCGGCGGCTATATTTCAGAGGTTCTACCACG AGAACGTCATCGACCACTTCAACAACCCTCGCAACGTCGGTTCCTTCGACAAGAACGATCCAAGCGTTGGTACCGGGCTTGTGGGGGCGCCTGCTTGCGG CGATGTGATGAAGCTGCAGATTAAGGTCGATGAAAAGACGGGGGAGATCGTGGATGCTCGATTCAAGACCTTCGGTTGCGGCTCCGCAATCGCATCCTCT TCTGTAGCTTCTGAGTGGGTGAAGGGGAAGCAGACGGAGGAGGTCCTGACCATCAAGAATACGCAAATCGCAAAGCATCTGTCTCTACCACCAGTTAAGC TCCACTGCAGCATGCTGGCAGAGGATGCCATCAAGGCTGCTGTGAAAGACTACCAAGCAAAGCGTGTGAAATCAAACGGGAACGAGGCAGCCGATGCACC TCTTCAGGAAGCTGCTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10002383 pacid=23179427 polypeptide=Lus10002383 locus=Lus10002383.g ID=Lus10002383.BGIv1.0 annot-version=v1.0 MLRLATNRILARAAAAKAPQQQAPAAIFQRFYHENVIDHFNNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDEKTGEIVDARFKTFGCGSAIASS SVASEWVKGKQTEEVLTIKNTQIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQAKRVKSNGNEAADAPLQEAAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	1.0	0.9071
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	2.8	0.8716
AT4G37440			unknown protein		Lus10014864 [exp]	3.5	0.8688
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	5.7	0.8668
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	6.5	0.8370
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	6.9	0.8330
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	6.9	0.8710
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	8.5	0.8405
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	9.2	0.8676
AT4G38225			unknown protein		Lus10026560 [exp]	13.0	0.8715

Compare expression of checked genes

Lus10002383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.