Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62960 272 / 3e-90 unknown protein AT1G10660 214 / 8e-68 unknown protein AT3G27770 190 / 1e-58 unknown protein AT1G70505 174 / 6e-52 unknown protein AT2G47115 123 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042109 [exp] 458 / 1e-163 AT5G62960 397 / 1e-138 unknown protein Lus10027692 [exp] 342 / 3e-118 AT5G62960 355 / 2e-122 unknown protein Lus10039964 [exp] 225 / 2e-70 AT5G62960 247 / 7e-78 unknown protein Lus10014556 [exp] 212 / 7e-67 AT5G62960 305 / 3e-102 unknown protein Lus10029133 [exp] 212 / 3e-66 AT1G10660 338 / 5e-115 unknown protein Lus10032130 [exp] 211 / 3e-66 AT5G62960 303 / 2e-101 unknown protein Lus10030594 [exp] 172 / 5e-52 AT1G70505 261 / 6e-86 unknown protein Lus10030895 [exp] 169 / 7e-51 AT1G70505 256 / 6e-84 unknown protein Lus10038056 [exp] 140 / 2e-39 AT1G10660 252 / 1e-82 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078200 [exp] 324 / 1e-110 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 313 / 1e-106 AT5G62960 387 / 1e-134 unknown protein Potri.010G042600 [exp] 244 / 1e-79 AT1G10660 372 / 1e-129 unknown protein Potri.001G347400 [exp] 229 / 2e-73 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 158 / 5e-46 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 157 / 8e-46 AT2G47115 344 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002386 pacid=23179420 polypeptide=Lus10002386 locus=Lus10002386.g ID=Lus10002386.BGIv1.0 annot-version=v1.0 ATGAGCATGGTAGCGGAGCTAACAGGGGACACGTGGCACCCGGTAATGACAGGGGACACAACAGCAGCCAGTTACTGGGTGAACTGGAGGTTCTTGCTTT GTGCCGTGTGGGTTTTGGCTTCGATGAACATTACATTGGTGTTGATATGGAAGAAAGAACACAACTTTCTTCGTCGCCAGGAGGAGGTTGAAGAAGAAGA AGAAAGAAAGGAGGAAGCTTTCATGTATGATGACCAGGCTTGGATGCCTTCCTTGAAAGGGATCCATCCAGCTTGGCTTCTGGGATTCAGACTCAGTGCC CTTTCAGTCCTCTTGCTTCTCCTTATTGTTTCTGTTCTTGTTGGTGGATCCACTGTTTTTTACTACTATACCCAGTGGACATTTACTTTGGTCACTCTCT ATTTTGCTATTGGAAGTTTGCTGTCGATTCGAGGATGTTACAAGTATCACAAAAGAGCTAGTGGGGATAGAGTTGGTGATGCAGAGTTGGATGCAGAACA TGGCGAGAGTACTTCCAAGTCAATGAAAGGCTCAACTCCTCCTTACCAAGCTGCAGTTCTGGATCCGCAACCTGCTGGAAAATTGGTTTATGCCTTTCAG ATCATTTTCCAGATGAATGCCGGGGCTGTAATGCTGACAGATTGTGTGTTTTGGCTCATAATTGTTCCATTCCTTGCAATCAAAGATTACCATCTCAATG CATTGATTGTTAGCATGCATTCCATGAATGCGATCTTCTTGCTTGGAGACACTGCCTTGAATTGCATGCCATTTCCCTTCTTCAGGATTGCATATTTCAT CCTCTGGACAATCGCTTATGTAGTGTTCCAGTGGATTCTCCATGCTTCTGTCAAACTATGGTACATCCCGAAACAATGA
AA sequence Show only first row Show all	>Lus10002386 pacid=23179420 polypeptide=Lus10002386 locus=Lus10002386.g ID=Lus10002386.BGIv1.0 annot-version=v1.0 MSMVAELTGDTWHPVMTGDTTAASYWVNWRFLLCAVWVLASMNITLVLIWKKEHNFLRRQEEVEEEEERKEEAFMYDDQAWMPSLKGIHPAWLLGFRLSA LSVLLLLLIVSVLVGGSTVFYYYTQWTFTLVTLYFAIGSLLSIRGCYKYHKRASGDRVGDAELDAEHGESTSKSMKGSTPPYQAAVLDPQPAGKLVYAFQ IIFQMNAGAVMLTDCVFWLIIVPFLAIKDYHLNALIVSMHSMNAIFLLGDTALNCMPFPFFRIAYFILWTIAYVVFQWILHASVKLWYIPKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10002386 [exp]	0	1
AT5G62960			unknown protein		Lus10042109 [exp]	3.3	0.8683
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	4.1	0.9160
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	8.0	0.8928
AT1G67040			unknown protein		Lus10017607 [exp]	13.3	0.8887
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	18.3	0.8778
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	20.0	0.8712
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	21.0	0.8763
AT1G29240			Protein of unknown function (D...		Lus10029223 [exp]	21.9	0.8022
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	25.1	0.8576
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	26.7	0.8226

Compare expression of checked genes

Lus10002386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.