Plant FIBer expression Database

Lus10002387 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G45150 949 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G180700
[exp]
993 / 0 AT1G45150 956 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10002387 pacid=23170838 polypeptide=Lus10002387 locus=Lus10002387.g ID=Lus10002387.BGIv1.0 annot-version=v1.0
ATGCCAAACTCTGTAAACGTTGGACCTCAGGACATGCCCAGAAGTCTGGACCCTATGAACCTCTTAGCAGCTAGAAATGAGAGAGAAAGTTTCCAAGTTG
CCCTACGTCCCAAAGTATCATGGTGTAGTTCTGGACTTGCAGGGGTTGCCCAGGTTCATTGCACCGACTTATCCTCAGTTTCTGGTGCTCGGTTAGTTGT
TGGACAATCAATTACAATGCGCAGAGTGGTTCCTGTGTTGGGAGTTCCAGATGCTCTTGTACCACTTGATCTTCCCTCAAGCCAGATAAACTTAGTTCCT
GGGGAAACATCAGCAGTTTGGATCTCCATTGATGTTCCACCTGAACAGCCACCTGGCCAGTATGAAGGGGAGGTCATCGTCACAGCCTTAAAGAATGAGG
CAGTGTTTCCAGCTCAAAGCATGGGTAGAGCTGAAAAGCATCAATTGTATATGGAACTTCAAAACTGTCTTGACATTGTGGAGCCCATTGATGGAAAACC
ACTGGATGAAGTGGTAGAAAGAGTGAAATCTGCTACCACTTCTCTAAGAAGAGTTCTTCTATCTCCATCGTTTTCTGAATTCTATTCAGATAATGGATCG
GTTGATAGTATGGATGAAGATGCTATTTCAAACCTGTCTGTACGTGTGAAGCTTAATTTGACTGTCTGGGAATTTGTTATTCCAACAACCCCCTCACTTC
CAGCTGTATTTGGCATATCTGATACTGTCATTGAGGATCGGTTTGGTGTTGAACATGGAACTAATGAATGGTACGATGCATTAGATCGGCACTTTAAGTG
GCTTCTTCAATACAGGATCAGCCCATACTTTTGCCGATGGGGAGATAGCATGCGTGTCTTGGCATACACCTCTCCGTGGCCAGCTGGTCATCCTAAATCA
GATGAATATCTCTCTGATCCAAGACTAGCAGCATATGCAGTACCATATAGTCGAGCAGTCTCTTGTAATCATGCAACAAAGGATTACTTGCAGAAAGAAG
TTGAGGTCTTGAGGACAAAATCTCACTGGAAAAAAGCCTACTTTTACTTGTGGGATGAGCCACTGAATATGGAACAATACAATTCGGTCCGGAATATGGC
CAGTGAGATTCATGCGTATGCTCCTGATGCTCGGATTTTGACAACTTATTATTGTGGACCCAATGATGCACCACTTGCACCTACTCCTTTCGAAGCTTTT
GTTAAAGTTCCAAAGTTTCTTCGTCCTCATACTCAAATTTACTGCACAAGCGAGTGGGTTCTTGGCAACAGAGAAGATCTCGTCAAGGATGTTATCTCTG
AATTGCAGCCGGAAAATGGGGAGGAATGGTGGACGTATGTGTGTATGGGGCCCTCAGATCCTCATCCCAACTGGCACATCGGGATGCGAGGTACACAGCA
CCGTGCTGTGATGTGGCGTGTATGGAAAGAAGGTGGGACAGGCTTTCTATACTGGGGAGCCAACTGCTATGAAAAGGCTTCTACTGCTAGTGCCGAGATA
AGATTCAGGCGTGGGTTACCACCGGGGGATGGGGTTCTCTTCTACCCAGGAGAGGTGTTCTCGTCTTCGAATGAACCAGTTGCTTCACTTAGACTGGAAC
GTATTCTAAGTGGCTTACAGGACTTTGAGTACCTGAAACTATACAGTTCAAGATTTGGAAGAGACGAAAGTCTTGCTCTGTTAGAAAGGACAGGGGTATA
TCTGGGGCCTGAAAGGTACACAGTAGAGCACATGCCAATCGACATTATGCGCGGCGAGGTTTACAACACATGCCGACCATGA
AA sequence
>Lus10002387 pacid=23170838 polypeptide=Lus10002387 locus=Lus10002387.g ID=Lus10002387.BGIv1.0 annot-version=v1.0
MPNSVNVGPQDMPRSLDPMNLLAARNERESFQVALRPKVSWCSSGLAGVAQVHCTDLSSVSGARLVVGQSITMRRVVPVLGVPDALVPLDLPSSQINLVP
GETSAVWISIDVPPEQPPGQYEGEVIVTALKNEAVFPAQSMGRAEKHQLYMELQNCLDIVEPIDGKPLDEVVERVKSATTSLRRVLLSPSFSEFYSDNGS
VDSMDEDAISNLSVRVKLNLTVWEFVIPTTPSLPAVFGISDTVIEDRFGVEHGTNEWYDALDRHFKWLLQYRISPYFCRWGDSMRVLAYTSPWPAGHPKS
DEYLSDPRLAAYAVPYSRAVSCNHATKDYLQKEVEVLRTKSHWKKAYFYLWDEPLNMEQYNSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFEAF
VKVPKFLRPHTQIYCTSEWVLGNREDLVKDVISELQPENGEEWWTYVCMGPSDPHPNWHIGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKASTASAEI
RFRRGLPPGDGVLFYPGEVFSSSNEPVASLRLERILSGLQDFEYLKLYSSRFGRDESLALLERTGVYLGPERYTVEHMPIDIMRGEVYNTCRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G45150 unknown protein Lus10002387
[exp]
0 1
Lus10014678
[exp]
5.8 0.8916
AT2G43940 ATHOL3, HOL3 HARMLESS TO OZONE LAYER 3, S-a... Lus10027086
[exp]
6.5 0.8768
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Lus10005091
[exp]
8.8 0.8868
AT1G11330 S-locus lectin protein kinase ... Lus10015422
[exp]
9.3 0.8821
AT3G02680 ATNBS1, NBS1 nijmegen breakage syndrome 1 (... Lus10020784
[exp]
10.6 0.8628
AT2G34930 disease resistance family prot... Lus10016341
[exp]
10.7 0.8346
AT4G01310 Ribosomal L5P family protein (... Lus10010251
[exp]
11.8 0.8493
AT2G17787 unknown protein Lus10013567
[exp]
12.2 0.8773
AT4G12010 Disease resistance protein (TI... Lus10019654
[exp]
13.3 0.8719
AT2G17900 ASHR1, SDG37 ASH1-related 1, SET domain gro... Lus10029712
[exp]
13.4 0.8685

Lus10002387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.