Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45910 145 / 4e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G48460 145 / 4e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 145 / 6e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 145 / 7e-40 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 142 / 8e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 141 / 2e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 140 / 6e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28610 137 / 4e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28660 133 / 1e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 133 / 2e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012693 [exp] 396 / 9e-134 AT1G25270 141 / 7e-37 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023008 [exp] 186 / 2e-56 AT2G27360 115 / 4e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020657 [exp] 176 / 4e-49 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000523 [exp] 150 / 1e-41 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013938 [exp] 143 / 5e-39 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034763 [exp] 141 / 2e-38 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10033302 [exp] 126 / 1e-32 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 121 / 4e-31 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 120 / 8e-31 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015200 [exp] 239 / 4e-76 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G225100 [exp] 224 / 3e-70 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024900 [exp] 196 / 1e-59 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 196 / 2e-59 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 194 / 2e-58 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 185 / 4e-55 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 185 / 4e-55 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 180 / 2e-53 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G054400 [exp] 144 / 2e-39 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 135 / 2e-36 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002389 pacid=23170822 polypeptide=Lus10002389 locus=Lus10002389.g ID=Lus10002389.BGIv1.0 annot-version=v1.0 ATGGAAGCATCAAACTCCTTCTTGCCTCTAGTGTTCATGCTCCTCCTTGTGCATCATGCATCTTGCTCAATGGCCCTTGATCTGAAAGCTTGCGGTTTAC GAGCGCTTTACAATTTCGGAGATTCCTTGTCCGATACTGGGAATGCCAAGATCGAGTTTCCAGGCCCCCATGCTTGGAAGTATCCTCTAGGGATGACCAC CGGCGGAGAAGTCACCGGCCGAGCTTGTGACGGCTTGTTGATCATTGACCGCATTGCCAGAGCAGCAGGACTTCCATTCACAAACCCTTACCTGAACAAG ACGGTGGACCATTCGAAAGGCGTCAATTTCGCAGTTGGTGGGACCGGTCTTCTGTCGAAAAAGCTCCGGCTGAAATGGAATGTCACGCTGCAGTACTCCC AGAGCAGCCTTGACGTCCAGCTACGTTGGTTCGACCGGTATCTTCTAGGAGCCTTCAAGAACAACACCGGTGTTCTCCAAGATCATCTTAAATCTTCTCT GTTCGTGATAGGAGGAGGTGGAAATGATTATGGTAACCTTGAGAAGAGGAATGACATCCCAGTCGTCGAGCAAAAGAAACGAATCATGCCAGATGTCATG AAATCAATGACGGCTGCTCTTCAGAAATTCATTAGCTATGGAGCAACCAGAATCATAGTGACTGGACTATCCAAAGGCGGGTGTCAACCCAACAACTACA ACGGTGTAGAGAAACTTCATTGCGACCCAGAAGCAAACGAATACCACTTCATCCATAACCACCTTCTTCTGCAGAAGATTCACCGATTGCGCAGGATGTT CCCTCATGTTCATATTGTGTATGCTGATCTCTGGTCCGCGAATCAGTGGATTTTCGACCACTACTCTTCTCTAGGGTTCATATATCCTCAGAAACAATGC TGTGGGACTGGTAGCCTGATATGCGGCTTCGACGGCTCGCCATATTGTACGAAACCAAGCGAGCATGTTTTTTGGGATGTTCCCGGACACTTCACTCATG CAGCCTACAGATACCTGTATGGCCGCATGATTCCGCAGCTCTCTTTGGGACTCAACTGTCACTCCAAGAAGAAAGAATGA
AA sequence Show only first row Show all	>Lus10002389 pacid=23170822 polypeptide=Lus10002389 locus=Lus10002389.g ID=Lus10002389.BGIv1.0 annot-version=v1.0 MEASNSFLPLVFMLLLVHHASCSMALDLKACGLRALYNFGDSLSDTGNAKIEFPGPHAWKYPLGMTTGGEVTGRACDGLLIIDRIARAAGLPFTNPYLNK TVDHSKGVNFAVGGTGLLSKKLRLKWNVTLQYSQSSLDVQLRWFDRYLLGAFKNNTGVLQDHLKSSLFVIGGGGNDYGNLEKRNDIPVVEQKKRIMPDVM KSMTAALQKFISYGATRIIVTGLSKGGCQPNNYNGVEKLHCDPEANEYHFIHNHLLLQKIHRLRRMFPHVHIVYADLWSANQWIFDHYSSLGFIYPQKQC CGTGSLICGFDGSPYCTKPSEHVFWDVPGHFTHAAYRYLYGRMIPQLSLGLNCHSKKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	0	1
					Lus10024552 [exp]	1.0	0.9865
					Lus10005609 [exp]	5.8	0.9642
					Lus10022573 [exp]	6.0	0.9777
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019719 [exp]	6.9	0.8496
					Lus10003840 [exp]	7.3	0.9777
AT2G27410	B3		Domain of unknown function (DU...		Lus10027272 [exp]	7.9	0.9043
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	8.5	0.9777
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	9.4	0.9347
					Lus10006661 [exp]	9.5	0.9777
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	9.8	0.9038

Compare expression of checked genes

Lus10002389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.