Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49770 127 / 1e-34 bHLH ZOU, RGE1, bHLH095 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024812 [exp] 131 / 2e-36 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018723 [exp] 57 / 3e-10 AT1G49770 66 / 7e-14 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305100 [exp] 165 / 3e-49 AT1G49770 180 / 1e-54 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025900 [exp] 140 / 1e-39 AT1G49770 138 / 9e-39 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002390 pacid=23170835 polypeptide=Lus10002390 locus=Lus10002390.g ID=Lus10002390.BGIv1.0 annot-version=v1.0 ATGGAGAATAACAATGGTGTAACCGTCGGCATGAAGAGAGAAAGAGGAGAAGAGAATACTCAGAAAAACACCACTGGTGGCCGTCGCGGCGAATCGGAAA AAGGTGCACACATATTCACCGAAAGAGAGCGGAGGAAAAAGATGAGGAACATGTTCTCCACCCTTCATGGTTTGCTTCCTCAACTTCCCCCAAAGGTTCA AGAAACCGGTAGGTGTAAGGCGGGCTTGAGGTCTTGTAGCGGGTTTAGTGTTGCTGAGAAAGTTATGTCAGGCGGCGGAAGCTTCATTTCACCGCAGTGC TCTTCTCGCTTGATTCGCCGCGCAGACAAATCCACCATAGTGGATGAAGCAGTGAAGCACATCAAATCCCTACAGCAAACCCTTCACGACCTTCAGCAAC GAAAGCTGCAAATCCTCCAAAGCCCGGCGTCACAAAAAGTCCCATCCGTTAGTTTTAACGACACTGTGATTATCAATGACGACGCTGCTATTAACGACGG TTATAACGCAGTAATTAATGACGGAAAAGTTCCGAGTTTGCTTCCCCTGGGGTTCCAGACATGGACGTCTGCCAATGTGATACTGAACATCTACGGCGAC GAGGCGCAGATTAGCATATGTAGGCCATCTTCGGGGAATAAGATTGGCGGCCAAGGAGTGTTCACCGCCGTTTGCTCTGTCCTGGAGAAGTACAACATTG ATGTCGTTACGGCTCACGTTGCGTCCATGTCTCACCGGCGCACGTTCATGATCCAAGTCCGTCATCGTCGCCCTCAGGAAAAGGTTGGAGCTGTGGAAGG CGGTTTTGCAGAGGCAACTGAGGTTGAAGGAATATACAAAGACGCTACAAATGAGATAATTAGTTATTTATCTTGTTGTTCTTGA
AA sequence Show only first row Show all	>Lus10002390 pacid=23170835 polypeptide=Lus10002390 locus=Lus10002390.g ID=Lus10002390.BGIv1.0 annot-version=v1.0 MENNNGVTVGMKRERGEENTQKNTTGGRRGESEKGAHIFTERERRKKMRNMFSTLHGLLPQLPPKVQETGRCKAGLRSCSGFSVAEKVMSGGGSFISPQC SSRLIRRADKSTIVDEAVKHIKSLQQTLHDLQQRKLQILQSPASQKVPSVSFNDTVIINDDAAINDGYNAVINDGKVPSLLPLGFQTWTSANVILNIYGD EAQISICRPSSGNKIGGQGVFTAVCSVLEKYNIDVVTAHVASMSHRRTFMIQVRHRRPQEKVGAVEGGFAEATEVEGIYKDATNEIISYLSCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10002390 [exp]	0	1
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	6.6	0.7513
AT2G27410	B3		Domain of unknown function (DU...		Lus10027272 [exp]	12.2	0.7420
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	12.6	0.7440
					Lus10005396 [exp]	20.2	0.7133
					Lus10003840 [exp]	22.6	0.7133
					Lus10022573 [exp]	24.7	0.7133
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10026935 [exp]	25.0	0.6463
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	26.7	0.7133
					Lus10012429 [exp]	28.6	0.7133
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	30.3	0.7133

Compare expression of checked genes

Lus10002390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.