Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00990 600 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 445 / 8e-139 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G62310 429 / 2e-134 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 422 / 5e-132 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 286 / 1e-81 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 201 / 9e-53 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027890 [exp] 1623 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 1004 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 617 / 0 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002051 [exp] 597 / 0 AT3G07610 172 / 1e-44 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 560 / 0 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 447 / 2e-140 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020033 [exp] 413 / 8e-128 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10037812 [exp] 329 / 8e-97 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002052 [exp] 270 / 5e-84 AT1G62310 199 / 5e-60 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 675 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 658 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.015G012800 [exp] 656 / 0 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 638 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 454 / 4e-142 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.004G006200 [exp] 426 / 8e-131 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 419 / 2e-129 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 385 / 9e-120 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 277 / 6e-78 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10002391 pacid=23170825 polypeptide=Lus10002391 locus=Lus10002391.g ID=Lus10002391.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGGCGGCTTCGATCAAGGTTGAAGAAGGAGCGATTGGGAGTCTTGAGGCCGTCGAGAAGGATGATACACCTGGAGGGGGTCGGTATTTTG AGGAAGAGGAGAGCGACACGATGAATGGAGGAGTTGAGAACCGGAACGAGACTGTCAATGGTGAAGAAGAAGAAGCGATTGATGCAATGGAGGTGGAGGT CCAAGGTCTTGCGAGCGTTGAGTCGGTCAAGAAGGAAGATACTTCGCCGTCGTTGGAGCGCGATGGAGGGGATCTGAATCTTGAGGAGAAAGAGGGTGAT GCGATGATGAATGGAGGAGGTGAGAATGGGACTGCGACTGAGGATGGGACTGTCGACGGTGAGGATGAAGTAGCGGAGGAAGAGGCTAATGGAGAGCCTT CTAAAAAGAGGGGAAGGAAAGAAGGTACGAAAAACCAGGGGCGAAAGAGTTCGGAGCCTGCCCAGGAACTGCGTCGCAGTAGCCGAGTTCATAAAAAAGT GAGCGTTGCGGAGCCCGATTCGAGTTCTGAGAGTGAGGATGCTTTACCTGTGAAAAAGCGACGGGAGACTTCTAAGCCAGTTGAGGAAGACAGTCGCAGC AGAAGCCGAGAACGTAAAAAAACGGTGAGAATTGCTGATTCCGTGTTGAGTTCTGAGAAGCTTGGTTCAACTAAGAGAAAGCAGCGACCGGAGAAGAGTG ATACTAAACCTAGCAAGGTGTCTTCAAAAGAGGAAAGTTCCGGTCTACAGATACGAGATTTAGTGTATGGAGAGCTCGCTTGTTTGGAAAGGAACCGCGA GTTTACAGAGAACTACTGTCTGATGTGCCATCAATGCCAGAGGAATGACAAGGGTAGTGTTGTTCGTTGCACCAAATGTAAGACTAAGCGATACTGCTTT CCCTGCATAGAGAGATGGTATCCTAAGATGACTCACGATGAAGTTGCAGCTGCCTGCCCTTTTTGCCTTAACAATTGTAATTGTAAATCATGCATGCGTC AGGATGTGGAAATGAAGGATCTGAAGACTCGGCTGGATGTGAAACCAACTCCCGATCAAAAGAAACAACATGCTGAATACATGTCGCAACTGCTCTTGCC CTTCTTGAAGCAGATTGATGAGGATCAATTACTTGAGAGAAAGATTGATGCAGGAATCCTAGGGGTGTCGGTAGACGATATGGACGTGCATGAAGCTGAA TGTCCAGCAGATGAGCGCATATACTGTGATATCTGCAAGACTGCTATCTTTGACTACCACAGAAACTGTTCAGAATGTGAATCTGATATTTGCCTTTACT GTTGCCGTGAGATCCGTGAGAATAATCTTCGCGGCAATGTGCCAAGTGTAGTTATGAAATATGATGATAGGGGATCTGATTATTTACATGGTATAACTGT CAAAGGAAAAAACACTCGTCCCAGTAGACGTGTTATAATGCCTGTTCCTGAGCTGGAGATTTCGGACGATCTACAACCCAAATCTGGTTGGAAAGCCAAT GGAGATGGTGGCATTAGTTGTGCTTGTGGTTCTGGCATTTTAGAACTCAAAACTCTGTATTCTGGTAATTGGGTCTCAAAGTTGGTGGAGAGAGCAGAAA GTCTTGTCAAAGTTGTTCTGGATGTGCCGACGACTAAAAAATGTGCATGCTTTAATTGTATCGGGGATCTAGAAGTTCAACGTGATAAGGTAATAGAGGC TTCATCTCGTAATGACTCGGATGATAACTATTTGTTCTATCCAAAGGCTAAGAATTTGACAGAAGAAGATTTTGAGCATTTTCGTCATCATTGGATGAAA GCTGAACCTGTCCTCGTCGGCAATGTGCTTGAAACTGGGTCTGGGTTAAGCTGGGAGCCTTCGGTTATGTGGCGTGCCTTCCGCCAAATAAAGAACGAGA AACATGATACACTCTTGGATGTGAAGGCGCTAGATTGTTTGGATTGGTGCGAGGTGGAAGTTAATGTCGCCAAGTTCTTCAAGGGATACTCACAGGGTCA TTTTGACGAGAAGGGCTGGCCTCGGATTCTGAAGCTTAAAGACTGGCCGCCATCTGCTATGTTCGATGAACGTCTGCCACGACATGGTGCTGAGTATACC TGCTGTTTGCCCTTTAAAGAGTACACTCATCTTGATAAAGGACCTCTAAATCTTGCATCCAAGCTTCCGGCAGAGTCTCTGAAGCCTGACGTTGGACCAA AGACATATATAGCTTATGGTTTCCCACATGAGCTTGGGCGTGGAGACTCTGTGACTAAGCTCCATTGTGACATGTCAGATGCGGTCAATATTTTGGCGCA CACAATTGAGATTGGATATGACAGCAATCAGCTTACTACAATAGAGAAATTGAAGAAAAAGCACCTTAAGCAAGACAGAAGGGAATTATACGTTGAAGAG AAGAGCAGTAGCAGTGAGGGTGAGGATGACCAAAGTCCCGAGGCTGGTGAAATATCAAACAGTTCTGACACTAAACTGGATAATGATTGTCCTCCTTGGA CATCACAATCGAACAGTTTGCAGACTCAGACGGAAAGGACCGAGTCTAAGGAAGCGTTGAAAAATTGGGAGACTAAAGTGGAAAGGATCGTGTGTGAGGA TGCGCAGAACTCTTTTGATTTTGATCAAGTGAAAACGATCAAGAAAGACGAAACATTATGCAGAAACCAAGCAGGACGGTCCAATGGGAAGAAAAATGCA GATGAAGTTTCAGAGATGCAGAGAATTGACGCGGTGGAAGGAGGTGCTCTATGGGACATCTTCCGCAGAGAAGATGTTCCCAAGCTGGAGGAATATCTTC TCAAGCACTTCACAGAGTTCAGGCACATCCATTGTGTTCCTGTGCAAGAGGTCATTCATCCCATACATGATCAAAGCTTTTATTTGTATGAAGAACATAA ACGGAAGCTCAAAGAAGAATATGGTATTGAACCTTGGACGTTCGTCCAGAAACTTGGTGATGCTGTCTTTATACCTGCTGGATGTCCCCATCAAGTGAGA AATTTGAAGTCATGCATCAAGGTGGCATCAGACTTTGTCTCGCCCGAAAACGTCGGAGAGTGCATTCGTCTGACAGAGGAGTTCCGCCTTCTCCCTATGA ACCATCGTTCAAAGGAAGACAAGTTGCAGGTACAGAAGATGTGTCTCTACGCAATGGACTGGGCGTTGGATACCTTAGACCCCGAGGAGAAATCGAAAGA TGAAGATGGGGAAGGAAACGAAAGCACAAGGGGAACTACCAGGAAAGCTGGAAATAGGAAAGGAAAGAAGAATAAGAAGAAGAGAGGCTGA
AA sequence Show only first row Show all	>Lus10002391 pacid=23170825 polypeptide=Lus10002391 locus=Lus10002391.g ID=Lus10002391.BGIv1.0 annot-version=v1.0 MEDEAASIKVEEGAIGSLEAVEKDDTPGGGRYFEEEESDTMNGGVENRNETVNGEEEEAIDAMEVEVQGLASVESVKKEDTSPSLERDGGDLNLEEKEGD AMMNGGGENGTATEDGTVDGEDEVAEEEANGEPSKKRGRKEGTKNQGRKSSEPAQELRRSSRVHKKVSVAEPDSSSESEDALPVKKRRETSKPVEEDSRS RSRERKKTVRIADSVLSSEKLGSTKRKQRPEKSDTKPSKVSSKEESSGLQIRDLVYGELACLERNREFTENYCLMCHQCQRNDKGSVVRCTKCKTKRYCF PCIERWYPKMTHDEVAAACPFCLNNCNCKSCMRQDVEMKDLKTRLDVKPTPDQKKQHAEYMSQLLLPFLKQIDEDQLLERKIDAGILGVSVDDMDVHEAE CPADERIYCDICKTAIFDYHRNCSECESDICLYCCREIRENNLRGNVPSVVMKYDDRGSDYLHGITVKGKNTRPSRRVIMPVPELEISDDLQPKSGWKAN GDGGISCACGSGILELKTLYSGNWVSKLVERAESLVKVVLDVPTTKKCACFNCIGDLEVQRDKVIEASSRNDSDDNYLFYPKAKNLTEEDFEHFRHHWMK AEPVLVGNVLETGSGLSWEPSVMWRAFRQIKNEKHDTLLDVKALDCLDWCEVEVNVAKFFKGYSQGHFDEKGWPRILKLKDWPPSAMFDERLPRHGAEYT CCLPFKEYTHLDKGPLNLASKLPAESLKPDVGPKTYIAYGFPHELGRGDSVTKLHCDMSDAVNILAHTIEIGYDSNQLTTIEKLKKKHLKQDRRELYVEE KSSSSEGEDDQSPEAGEISNSSDTKLDNDCPPWTSQSNSLQTQTERTESKEALKNWETKVERIVCEDAQNSFDFDQVKTIKKDETLCRNQAGRSNGKKNA DEVSEMQRIDAVEGGALWDIFRREDVPKLEEYLLKHFTEFRHIHCVPVQEVIHPIHDQSFYLYEEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVR NLKSCIKVASDFVSPENVGECIRLTEEFRLLPMNHRSKEDKLQVQKMCLYAMDWALDTLDPEEKSKDEDGEGNESTRGTTRKAGNRKGKKNKKKRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002391 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	1.7	0.9481
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	7.2	0.9400
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	8.5	0.9392
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	10.0	0.9174
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	11.8	0.9203
AT5G16250			unknown protein		Lus10026857 [exp]	14.5	0.9150
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	19.1	0.9104
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	21.8	0.9152
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	24.5	0.9126
AT5G58610			PHD finger transcription facto...		Lus10012522 [exp]	24.8	0.8694

Compare expression of checked genes

Lus10002391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.