Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 507 / 3e-169 ARA12 Subtilase family protein (.1) AT4G34980 501 / 5e-167 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 489 / 4e-162 Subtilase family protein (.1) AT3G14240 484 / 4e-160 Subtilase family protein (.1) AT5G51750 477 / 2e-157 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 471 / 2e-155 Subtilase family protein (.1) AT1G01900 446 / 1e-145 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 431 / 1e-139 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 420 / 7e-136 Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 421 / 2e-135 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027891 [exp] 1412 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002393 [exp] 1014 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10000379 [exp] 584 / 0 AT5G67360 171 / 2e-47 Subtilase family protein (.1) Lus10018721 [exp] 575 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 565 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10024815 [exp] 540 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 518 / 2e-173 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 515 / 4e-172 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 500 / 3e-166 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 991 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 648 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.007G045100 [exp] 552 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 547 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 545 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 542 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G067000 [exp] 512 / 8e-171 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 509 / 7e-170 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G163600 [exp] 507 / 4e-169 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 503 / 1e-167 AT3G14067 978 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10002392 pacid=23170829 polypeptide=Lus10002392 locus=Lus10002392.g ID=Lus10002392.BGIv1.0 annot-version=v1.0 ATGGCTCCAATTCTTAGGCTTCCAATTCTTTTCCTCCTCTTCTCGATGACCACGCCACTCTCCACGTCATCCGTCCGCAAGACCTACATCGTCCACATGG ACAAATCAGCAACTCCGAGTGTCTTCTCCACGCCACATGATTGGTACATGTCGATACTCTCGTCCATGTCATCAGCTGACATGGATGATGACCAACCTAT CCATCTCTACACCTACAAGCATGTCATCAACGGATTCAGTGCTGTCCTATCACAAGCCGAGCTCGGCAGGCTCGAGCAGATCGACGGCCACGTAGCCTCG TTCCCTGAATCCTTTGGCCATCGACACACAACCCACTCACCAAGATTTCTGGGACTAAACAAACACACAGGCTTGTGGCCAGCTAGCAAGTTTGGTGATG ACGTAATCATAGGTGTACTCGACACGGGAATTTGGCCTGAAAGCGAGAGCTTCAACGACGAGCTCATGTCGCCGGTGCCTGACAGATGGCGAGGAATCTG CGAAAGTGGAGTCGAATTCAATGCTTCCGATTGCAATAGGAAGTTGATTGGCGCGAGGAAGTTCAGCAAAGGAATGGAGCAACAAGGATTAAACATATCA ACAACTTACGACTACGACTCACCTCGTGATTACCTCGGCCATGGAACACACACATCGTCGACGGCAGCTGGAAGCAGAGTCTCCAACGTCGACTACTTCG GTTATGCACGCGGAACAGCCACCGGAATTGCCCCGATGGCCAGGCTAGCAATGTACAAGGTATTGTTCAACGACGACGGTATGGACGGCGATAAGTCCTA CGATGCGGCCGGGACTGACGTCCTCGCCGGGATGGACCAAGCCATCGAGGATGGCGTCGATATCATGTCTCTGTCATTGGCGTTCTTCGAGACCGTGCCG TTTTTCGAGAACCCCATTGCGATCGGAGCTTTCGCGGCAATGAAAAGGGGCATCTTCGTGGCGTGCTCAGCCGGAAATGGTGGCCCTCACGGGTACACGA TGTTTAACGGAGCTCCTTGGATCACGACAGTGGGTGCTGGCACCCTCGATCGTGACCTTGGAGCTCGGATCATTCTCGGAGAGGACGATTTGATTGTTAC CGGACATTCGATGTATCCAGAGAATCTGTTCATAGACAGAGTTCCTCTGTATTTCGGTACAAGGAATCGGAGTACGGAAACTTGTGACGTTATCGATCTA AGTCAAGCCGCAGGGAAGTTCGTGTTTTGCGATCATGATGACGACGATAACGATGATCACAATGCTACATTAGGGTTTAAACCGATATACGAGACCTTTT ATAATAAAGATGATTTGGGAGACGGCATTGGTGCCGTCTCTGGAATAATCAAAAGCATGGATGAGGCCGATGTAGAGTTCTACGGCCACGCTACAGATTT TGACACGCCGTATGTCATGGTGAGCACGAAAATCGGAGACATGATCAAGGGATACATACTCAACTCAACTAACTCAACCGTGAGTGTGAACTTCGGCGTG ACAATTTACGGGCATAAATCGGCTCCTAAGGTCACATATTTCAGTTCCAGAGGACCTGATGAGAGGTCCCCTTGGATACTGAAGCCCGACCTTATAGCCC CCGGCTACGACATATTAGCCGCGTGGGCTCCGAATCGGGCTTTTGCCCCTATTCGAGGAGGGGATAATTACTTGCAGACGGATTATGCTATCATCTCAGG TACGTCAATGTCGTGTCCACACATAGCCGGGTTGGCTGCATTGATGAAATCAGCACACAAAGACTGGACCGTGGCCGCGATCCGTTCAGCCATGATGACA ACATCATACATTACGGACAATGTCGGAGGTACGATCATCGATATGACGACACGAGAGGCAGGAACGCCCCTCGATTTCGGGTCTGGACATGTGAATCCCA ATAAGGCATTGGATCCGGGCTTGGTCTACGACATCGGAACCAATGACTATGTGAACTACCTATGTGCAATGAACTATACTAAGTCCGAGATAGGGATCCT TACTAGGGAGTCCCCGAATTCAATCAGTTGCGAATTCGGGACCCTCGATCTGAACTACCCGTCATTCATGGTGGTGATGAACAACACAAATTCACAAAAC TTGACGTTTTCGAGGGTCGTGACGAATGTAGCGGAAGGCGGCTCAGTTTACCATGCTGTGGTGGAGATTTCTAGTGGCATGACGGCTGTTGTGGAGCCTT CTGTGATCAGTTTTGAAAGGCAATATAGTACGGCTGCGTTTAACTTGACTGTGGATGTCGTTTTGGACGGTGGGGTTGGTGGAGGTAAGAGTGATTACAT TGGGAACTATGGGTACTTGAGTTGGGTTGAGGTCAACGGGACGCATGTTGTTAGGAGTCCAATTGTGTCCGCAATGGCATCTCCTAGGACTTGA
AA sequence Show only first row Show all	>Lus10002392 pacid=23170829 polypeptide=Lus10002392 locus=Lus10002392.g ID=Lus10002392.BGIv1.0 annot-version=v1.0 MAPILRLPILFLLFSMTTPLSTSSVRKTYIVHMDKSATPSVFSTPHDWYMSILSSMSSADMDDDQPIHLYTYKHVINGFSAVLSQAELGRLEQIDGHVAS FPESFGHRHTTHSPRFLGLNKHTGLWPASKFGDDVIIGVLDTGIWPESESFNDELMSPVPDRWRGICESGVEFNASDCNRKLIGARKFSKGMEQQGLNIS TTYDYDSPRDYLGHGTHTSSTAAGSRVSNVDYFGYARGTATGIAPMARLAMYKVLFNDDGMDGDKSYDAAGTDVLAGMDQAIEDGVDIMSLSLAFFETVP FFENPIAIGAFAAMKRGIFVACSAGNGGPHGYTMFNGAPWITTVGAGTLDRDLGARIILGEDDLIVTGHSMYPENLFIDRVPLYFGTRNRSTETCDVIDL SQAAGKFVFCDHDDDDNDDHNATLGFKPIYETFYNKDDLGDGIGAVSGIIKSMDEADVEFYGHATDFDTPYVMVSTKIGDMIKGYILNSTNSTVSVNFGV TIYGHKSAPKVTYFSSRGPDERSPWILKPDLIAPGYDILAAWAPNRAFAPIRGGDNYLQTDYAIISGTSMSCPHIAGLAALMKSAHKDWTVAAIRSAMMT TSYITDNVGGTIIDMTTREAGTPLDFGSGHVNPNKALDPGLVYDIGTNDYVNYLCAMNYTKSEIGILTRESPNSISCEFGTLDLNYPSFMVVMNNTNSQN LTFSRVVTNVAEGGSVYHAVVEISSGMTAVVEPSVISFERQYSTAAFNLTVDVVLDGGVGGGKSDYIGNYGYLSWVEVNGTHVVRSPIVSAMASPRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002398 [exp]	1.4	0.8777
					Lus10026796 [exp]	2.4	0.8597
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	3.2	0.8087
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10009144 [exp]	6.6	0.6674
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	8.4	0.7988
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	8.5	0.8268
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	9.4	0.7826
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	9.6	0.8222
					Lus10033017 [exp]	14.8	0.5953
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	17.5	0.8074

Compare expression of checked genes

Lus10002392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.