Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 450 / 1e-147 ARA12 Subtilase family protein (.1) AT4G34980 448 / 5e-147 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 442 / 7e-145 Subtilase family protein (.1) AT3G14067 441 / 5e-144 Subtilase family protein (.1) AT5G51750 427 / 9e-139 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 425 / 5e-138 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 421 / 3e-136 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14240 418 / 3e-135 Subtilase family protein (.1) AT5G67090 417 / 3e-135 Subtilisin-like serine endopeptidase family protein (.1) AT1G20160 392 / 9e-126 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027891 [exp] 1010 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 1003 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10018721 [exp] 565 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 561 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027895 [exp] 548 / 0 AT2G04160 207 / 5e-59 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 482 / 5e-160 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 473 / 3e-156 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 471 / 2e-155 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 447 / 2e-146 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 898 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 598 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.014G026700 [exp] 502 / 1e-167 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 498 / 5e-166 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 491 / 1e-163 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 488 / 5e-162 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074600 [exp] 469 / 6e-155 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.003G067000 [exp] 451 / 6e-148 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 448 / 6e-147 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.005G145300 [exp] 446 / 6e-147 AT5G67360 932 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10002393 pacid=23170828 polypeptide=Lus10002393 locus=Lus10002393.g ID=Lus10002393.BGIv1.0 annot-version=v1.0 ATGTCATCAGAACCTCTCCATCTCTACACCTACAAGCATGTCATCAACGGATTCAGCGCTGTCCTCACACAAGCTCAGCTCGATCAAGTAGAGCTGATCC CTGGCCACGTCGCGACCTTCCCTGAATCCTACGGCCACCGACACACGACATACACCCCAAAATTCCTCAGCCTGAACAAACACACAGGCATATGGCCAGC TGGCAAGTATGGTGGTGATGACGTAATCATTGGCGTGCTGGACACAGGAATCTGGCCGGAAAGCGAAAGCTTTAGTGATCACCTCATGCCTCCTGTGCCT GAAAGATGGCGAGGAGCATGCGAAAACGGTGTCGGATTCAATGTTTCAAACTGCAACAGGAAGATGATTGGTGCTAGGAAGTTCAGCAGAGGGATGAAGC AGCAAGGTTTGAACATATCAACCGTTGACGACTACGACTCTCCTCGCGATTATTACGGCCATGGGACTCACACCTCGTCGACTGCAGCTGGTAGTCGAGT TTTGAACGTCGATTACTTCGGCTATGCACGTGGATCAGCTACCGGAATCGCTCCGATGGCTAGGCTCGCCATGTACAAGTGGACTGCTGCCGGCAATCGA GTTTCGAACATCGATTACTATGGCTATGCAGGTGGATCGGCTACTGGAATCGCTCTGATAGCGAGGCTCGCTATATACAAGGTGCTGTTCAAGAACGGTG ATAACATCAGCGATGCCAAGGCCTACGCTGCTGCTGCAACTGATGTGCTTGCAGGGATGGACCAGGCGATCGAGGATGGCGTGGACATCATGTCGTTGTC GTTGGGGTTCTCCGAGAATGCGTTTTACGACAACCCGATAGCAATCGGAGCATTTGCAGCTTTAAAGAAGGGTATTTTCGTTGTATGTGGTGCTGGAAAT GATGGCCCTCGTGTATACACTATAGTCAATGGAGCTCCCTGGGTCACGGCTGTCGGTGCGGGGACCATCAGTCGCTATCTCGGAGCTCGAATCACTCTAT TAGGTGGAGAGGATTCTCCTACATTGTTTGGAGATTCCTTGTATCCAGAGAATCTTTTCATAAACAGAGTCCCTCTGTATTTCGCCAGTGGGAATCGGAG CAAGGAGACTTGTGATATCATTGACCTCAATGATTTTGCAGGCAAGTTCGTCTTCTGCGACAATCCAGAAGCCTTTCGACCGAGCTACGAAAATGATAAT AACGGACTTGGACCCAACGCCATGGCTGGCATTATCGTTAGCTCGGACAAAGACGAGTTTCGCGACCAAGTTGGTAGCTTTGGGATGCCGTATGTTGTGG TGAACACAAAAGATGGAGACTTGGTCAAAGGTTACATACTCAACTCGAAGAATTTGAATTCGACACTTATTAGTGTGGAATTCGGGCTGACAGTTTTTCG TGACAAGCCAGCACCTAAAGTTGCGTACTTTAGTTCAAGGGGACCTGACGAGAAGTCGCCTTGGATCCTGAAGCCTGATATCTTAGCTCCGGGGTACGAT ATTCTAGCTGCGTGGGTTCCGAATCGGCCATTTGCTCCGATTCGAGGAGGGGAGGATTACCTGCAGACGGACTATGCTATCTTATCAGGTACATCAATGT CATGTCCACATATATCCGGGGTAGCTGCATTGCTGAGATCAGCACACAAGGACTGGACCCTGGCTGCGATCCGGTCAGCAATGATGACAACAGCCTATGT TACGGACAATATCGGAGGTACGCCTCTTGATTTCGGAGCAGGACACGTGGATCCAAACAAGGCATTGGATCCCGGCCTGGTCTATGACATTGGGACTGAT GACTATGTGAACTACTTGTGTGCAATGAACTATAGTAAGTCCGAGATAGGGGTCGTAATTGGGGAGGGTCCGAAATCTATCGGATGCGAGTCCGCTACCC TTGATCTGAACTACCCATCGTTCATGGTGGTGATGAATAAGACGAATTCGAGCAGCGTGACATTTTCGAGAGTGGTGACGAATGTGGCTGATGGAAGTGG GAGTTCGGTTTATCGTGCTGTGGTGGAAACTCAAAGTGGGATGACGGCTGTTGTGGAGCCTTCTGTGATCAGATTTGAAGGGAGGTATAGTACTGCTGCG TTTAACTTGACTGTGGATGTCGTTTTGGATGGAAGTTATAAGAGTGGTTACATTGGGAATTATGGGTTCTTGAGTTGGGTTGAGTTGAATGGAAAGCATG TTGTTAGGAGTCCAATTGTCTCTGCAATTGCATCTCCTAGAACCTGA
AA sequence Show only first row Show all	>Lus10002393 pacid=23170828 polypeptide=Lus10002393 locus=Lus10002393.g ID=Lus10002393.BGIv1.0 annot-version=v1.0 MSSEPLHLYTYKHVINGFSAVLTQAQLDQVELIPGHVATFPESYGHRHTTYTPKFLSLNKHTGIWPAGKYGGDDVIIGVLDTGIWPESESFSDHLMPPVP ERWRGACENGVGFNVSNCNRKMIGARKFSRGMKQQGLNISTVDDYDSPRDYYGHGTHTSSTAAGSRVLNVDYFGYARGSATGIAPMARLAMYKWTAAGNR VSNIDYYGYAGGSATGIALIARLAIYKVLFKNGDNISDAKAYAAAATDVLAGMDQAIEDGVDIMSLSLGFSENAFYDNPIAIGAFAALKKGIFVVCGAGN DGPRVYTIVNGAPWVTAVGAGTISRYLGARITLLGGEDSPTLFGDSLYPENLFINRVPLYFASGNRSKETCDIIDLNDFAGKFVFCDNPEAFRPSYENDN NGLGPNAMAGIIVSSDKDEFRDQVGSFGMPYVVVNTKDGDLVKGYILNSKNLNSTLISVEFGLTVFRDKPAPKVAYFSSRGPDEKSPWILKPDILAPGYD ILAAWVPNRPFAPIRGGEDYLQTDYAILSGTSMSCPHISGVAALLRSAHKDWTLAAIRSAMMTTAYVTDNIGGTPLDFGAGHVDPNKALDPGLVYDIGTD DYVNYLCAMNYSKSEIGVVIGEGPKSIGCESATLDLNYPSFMVVMNKTNSSSVTFSRVVTNVADGSGSSVYRAVVETQSGMTAVVEPSVIRFEGRYSTAA FNLTVDVVLDGSYKSGYIGNYGFLSWVELNGKHVVRSPIVSAIASPRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	0	1
					Lus10027893 [exp]	1.7	0.9298
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015613 [exp]	2.2	0.8626
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	3.2	0.9007
					Lus10033730 [exp]	5.7	0.8721
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10009911 [exp]	6.9	0.8562
AT2G37890			Mitochondrial substrate carrie...		Lus10016522 [exp]	7.0	0.8521
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10027895 [exp]	9.2	0.8284
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	10.4	0.8627
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	10.5	0.8392
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	12.4	0.8416

Compare expression of checked genes

Lus10002393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.