Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00900 184 / 9e-60 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 184 / 9e-60 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1) ATMG01270 50 / 8e-08 ATMG01270.1, RPS7 mitochondrial ribosomal protein S7 (.1) AT2G07696 50 / 8e-08 Ribosomal protein S7p/S5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027894 [exp] 283 / 1e-97 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10000168 [exp] 60 / 3e-12 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10002395 [exp] 60 / 3e-12 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10008436 [exp] 45 / 2e-05 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Lus10013381 [exp] 44 / 2e-05 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2) Lus10000946 [exp] 44 / 4e-05 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140500 [exp] 191 / 2e-61 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.013G138900 [exp] 183 / 2e-59 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.011G084201 [exp] 114 / 8e-33 ATCG00900 186 / 2e-62 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.011G075200 [exp] 69 / 1e-15 ATCG00900 81 / 7e-22 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.007G061841 [exp] 49 / 3e-07 ATMG01270 291 / 4e-103 mitochondrial ribosomal protein S7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10002394 pacid=23170821 polypeptide=Lus10002394 locus=Lus10002394.g ID=Lus10002394.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCAACCTCCACCTGCTTCCGTCCTCCACAAATCTCCGCCTCTCTCACTCTCCACCGCTCTCCAAACTTCACCTCCACACTCCCTTCCCCTT TCAACCTCTTCTCCGGTGGCGATAAAGCCCTAACCCTCCGTTTACCCAAATTCCCTTCGTTTTCCCCTCTCGAGATCGTCTGCCAGCGCGGCGGCAAAGG TGTGAAGAAAGACAAAACAGTGAAACCCGACCCGGTGTACCGCAACCGGCTGGTAACACTCTTCGTGAACCGAGTCTTGAAGAACGGTAAAAAGTCACTA GCTTTCTACATAATGTACAAGGCTTTAAGAAGGGTTCAGGAGAAAACTGGGGAGAACCCATTGGAAGTGTTGAGGGACGCAGTGCAAGGTGTGACCCCTG ACGTGGCAGTGAAAGCTAGGAGAGTAGGGGGTTCGACTCAGCAGGTCCCCGTCGAGGTGGACGCGGCCACTGGGAAAGCACTGGCGATTCGTTGGCTGCT GATTGCAGCTCGAAAGAGGCAAGGTAAGGATATGGTGTTTAAGCTGAGCAATGAGCTTATGGATGCTGCTAAGGGGAGTGGTGATGCTGTTAGGAAGAGG GAGGAGGTTCACAAGACCGCTGAGGCAAATCGCGCTTTCGCACATTATCGTTAG
AA sequence Show only first row Show all	>Lus10002394 pacid=23170821 polypeptide=Lus10002394 locus=Lus10002394.g ID=Lus10002394.BGIv1.0 annot-version=v1.0 MAASTSTCFRPPQISASLTLHRSPNFTSTLPSPFNLFSGGDKALTLRLPKFPSFSPLEIVCQRGGKGVKKDKTVKPDPVYRNRLVTLFVNRVLKNGKKSL AFYIMYKALRRVQEKTGENPLEVLRDAVQGVTPDVAVKARRVGGSTQQVPVEVDAATGKALAIRWLLIAARKRQGKDMVFKLSNELMDAAKGSGDAVRKR EEVHKTAEANRAFAHYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	0	1
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	2.0	0.9594
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	3.7	0.9207
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	4.0	0.9495
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	8.1	0.9392
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	8.2	0.9415
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	8.3	0.9422
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	8.8	0.9352
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	9.5	0.9120
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	10.4	0.9184
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	11.2	0.9414

Compare expression of checked genes

Lus10002394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.