Plant FIBer expression Database

Lus10002395 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00900 46 / 4e-08 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
ATCG01240 46 / 4e-08 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000168
[exp]
119 / 2e-37 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Lus10027894
[exp]
60 / 1e-12 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Lus10002394
[exp]
59 / 2e-12 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G075200
[exp]
47 / 5e-09 ATCG00900 81 / 7e-22 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Potri.013G138900
[exp]
48 / 9e-09 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Potri.004G140500
[exp]
43 / 1e-06 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence
>Lus10002395 pacid=23170820 polypeptide=Lus10002395 locus=Lus10002395.g ID=Lus10002395.BGIv1.0 annot-version=v1.0
ATGATTTGTTGGGCTGATTACAGCTCGAAAGAGGCCGACAAGGTAGGGGATATGGTGTTCAAGCTGAGTAATGAACTGATGGATGCAGCTAAAGGGGGTG
GTCATGTTGTTAGGAAGAAGGACGAAGTGCTTAAGACCGCTGAGGCGAATGAGGGCTGTCGAGCATTGTCGTTGTAA
AA sequence
>Lus10002395 pacid=23170820 polypeptide=Lus10002395 locus=Lus10002395.g ID=Lus10002395.BGIv1.0 annot-version=v1.0
MICWADYSSKEADKVGDMVFKLSNELMDAAKGGGHVVRKKDEVLKTAEANEGCRALSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Lus10002395
[exp]
0 1
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Lus10000168
[exp]
1.0 1.0000
AT2G46300 Late embryogenesis abundant (L... Lus10010130
[exp]
2.4 0.8825
AT3G28470 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPM... Lus10005834
[exp]
6.6 0.9104
Lus10008418
[exp]
8.7 0.7931
AT3G18180 Glycosyltransferase family 61 ... Lus10032457
[exp]
8.8 0.7808
Lus10034849
[exp]
9.8 0.8592
Lus10025316
[exp]
11.4 0.8372
AT3G43660 Vacuolar iron transporter (VIT... Lus10031543
[exp]
11.6 0.7530
AT2G40780 Nucleic acid-binding, OB-fold-... Lus10030510
[exp]
12.5 0.8372
AT5G39200 unknown protein Lus10030710
[exp]
13.5 0.8372

Lus10002395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.