Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26330 70 / 5e-14 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT1G32940 65 / 2e-12 ATSBT3.5 Subtilase family protein (.1) AT2G05920 65 / 3e-12 Subtilase family protein (.1) AT5G67090 64 / 6e-12 Subtilisin-like serine endopeptidase family protein (.1) AT4G10530 62 / 2e-11 Subtilase family protein (.1) AT1G32960 62 / 3e-11 ATSBT3.3 Subtilase family protein (.1) AT1G32970 62 / 3e-11 Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 62 / 3e-11 ATSBT1.3 subtilase 1.3 (.1) AT4G10520 61 / 7e-11 Subtilase family protein (.1) AT4G21630 60 / 1e-10 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000378 [exp] 98 / 8e-27 AT5G45650 71 / 6e-16 subtilase family protein (.1) Lus10002044 [exp] 94 / 5e-25 AT5G67090 74 / 2e-16 Subtilisin-like serine endopeptidase family protein (.1) Lus10027896 [exp] 94 / 8e-25 AT5G67360 58 / 4e-11 Subtilase family protein (.1) Lus10002392 [exp] 133 / 1e-23 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10027891 [exp] 132 / 5e-23 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002393 [exp] 119 / 2e-18 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10018721 [exp] 68 / 2e-13 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 68 / 3e-13 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10007765 [exp] 66 / 1e-12 AT5G67360 990 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 105 / 2e-26 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 87 / 5e-20 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.001G002200 [exp] 67 / 4e-13 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 67 / 6e-13 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G018900 [exp] 65 / 2e-12 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.014G026700 [exp] 65 / 3e-12 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G071800 [exp] 64 / 4e-12 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 64 / 5e-12 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 63 / 9e-12 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.011G076700 [exp] 63 / 9e-12 AT5G45650 970 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Lus10002398 pacid=23170831 polypeptide=Lus10002398 locus=Lus10002398.g ID=Lus10002398.BGIv1.0 annot-version=v1.0 ATGGACAAATCAGCCATCCCAACACCCTTGGTGACTCCACACGATTGGTACACGTCAATTCTCTCGTCCATGTCATCAGAACCTCTCCATCTCTACACCT ACAAGCATGTCATCAACGGATTCAGCGCTGTCCTCACACAAGCTCAGCTTGATCAAGTAGAGCAGATCCCCGGCCACGTGGCGACTCTCCTAGTGAAGTT CAGCAAAGGAATGGAGCAACAAGGATTAAACATATCAACAACTTACGACTACGACTCACCTCGTGATTACCTCGGCCATGGAACACACACATCGTCGACG GCAGCTGGAAGCAGAGTCTCCAACGTTGACTACTTCGGTTATGCACGCGGAACAGCCACCGGAATTGCTCCGATGGCCAGGCTAGCAACAAGGTATTGCT CAACGACGACGGTATGGACGGCGAGAAGTCCTACGATGCGGCCGGGACTGACGTCCTCGCCGGGATGGACCAAGCCATCGAGGATGGCGTCGATATCATG TTTCTGTCATTGGCGTTCTTCGAGACCGTGCCGTTTTTCGAGAACCCCATTGCGATCGGAGCTTTCGCGGCAATGA
AA sequence Show only first row Show all	>Lus10002398 pacid=23170831 polypeptide=Lus10002398 locus=Lus10002398.g ID=Lus10002398.BGIv1.0 annot-version=v1.0 MDKSAIPTPLVTPHDWYTSILSSMSSEPLHLYTYKHVINGFSAVLTQAQLDQVEQIPGHVATLLVKFSKGMEQQGLNISTTYDYDSPRDYLGHGTHTSST AAGSRVSNVDYFGYARGTATGIAPMARLATRYCSTTTVWTARSPTMRPGLTSSPGWTKPSRMASISCFCHWRSSRPCRFSRTPLRSELSRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002398 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	1.0	0.8890
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	1.4	0.8777
					Lus10026796 [exp]	2.4	0.8605
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	9.2	0.8403
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	9.9	0.8010
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	10.4	0.8418
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	10.7	0.8285
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	15.0	0.8173
					Lus10015218 [exp]	15.0	0.8185
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	17.7	0.8206

Compare expression of checked genes

Lus10002398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.