Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34000 120 / 5e-30 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 117 / 7e-29 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G49720 112 / 2e-27 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT1G45249 109 / 2e-26 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G56850 92 / 5e-21 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 75 / 3e-15 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT5G42910 76 / 6e-15 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 62 / 3e-10 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G44460 60 / 9e-10 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 52 / 3e-07 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027897 [exp] 274 / 3e-88 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10019850 [exp] 206 / 1e-63 AT4G34000 189 / 2e-57 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10014066 [exp] 208 / 6e-63 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 120 / 3e-30 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10009755 [exp] 115 / 5e-28 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10008928 [exp] 84 / 5e-19 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 86 / 2e-18 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 82 / 2e-17 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 78 / 2e-15 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101200 [exp] 157 / 7e-44 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.002G125400 [exp] 152 / 2e-41 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.004G140600 [exp] 143 / 1e-38 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 137 / 3e-36 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.010G248300 [exp] 90 / 6e-20 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 87 / 9e-19 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 86 / 2e-18 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 76 / 2e-15 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 76 / 3e-15 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 74 / 7e-15 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10002399 pacid=23170834 polypeptide=Lus10002399 locus=Lus10002399.g ID=Lus10002399.BGIv1.0 annot-version=v1.0 ATGGGGTCACATTTCAACTTCAGCAGCTTTGGCAACCCAACGAATTCGCCATTGGTTCGCCAGCAGTCCTCTGTGTACTCCTTGACATTTGACGAGCTCC AGAACACCTGGGGTGGAAGCATAGGGAAGGATTTCTGGTCGATGAACATGGATGAGCTGCTGAAGAACATATGCACTGCTGAAGAAACAAGTACAATAGG CGTGGTAGAAGAAGCCAGTACAGGGAACCTTCAGAGACAAGGCTCTTTAACTCTGCCAAGGACTTTGAGTCAGAAGACTGTTGATGAGGTCTGGAAAGAC TTCATTAAAGAGAACAGCGTAAACGCTGCTGCTTCGAAGAATGATGTGACTCGACCGCGTGTTCAGCTCAGCTGTTCGAACTTGGGACTGAATGTTGGTG GAATTAGACCTCCTCCACATCAGCAGCAGCATCAACAGTCATTTCATCGATCTCGTAATCAACCTCAGCAGCAGCAACAACAGCCACTCTTGTTTCCTAA ACCAGCTACTGTGCCTTTTGCATCTCCAGTGCACAACAAGGTAAATGGCGGTCGAAGCTCTGCAGCAGGTGTTACAGTTGCAACAGCATCTCCTGCGAGT CAGGGATCACCCGATGTGCTATCGAGGAGCGATGCTGACACGTCGTCAGTTTCGCCAGTGCCTTATGTGTTCAGCAGCCGAGGAAGGAGGCCTAATACAG CGCTCGAGAAGGTTGTTGAAAGAAGGCAGAGAAGAATGATCAAGAATCGGGAGTCTGCAGCGCGATCTCGTGCTCGCAAGCAGGCATATACACTAGAGCT TGAAGCAGAGGTCGCGAAACTGAAGGAGCTGAACGAAGAACTGGAAAGAAAACAGGCTGAAATAATGCAAATGCAGCAAAATCAGGTATCCAAATCTTCT TCACTTTGTGAAAGTTTTCTCCTTTACTATAACTCTTCCAATCCATCTCTCATATGTAGATGTCACGAAAAAGGCGTACATTTGGATGCTAGAATATTCT ATAGGTCTGAGTTCTACTGTGATTTTGCAGTGCTTGGAGAAAATGAAGCATCAATGGGGAGGCAAGCGGCTTTGCTTGAGGAGGACACTGACGGGGCCAT GGTAGAGAGTCAGAATCAATTAGACATTGTTTCGAAGCATCATGTACGAGATTCTACGATCATCATCGCGTATAAATACTTATGTTAG
AA sequence Show only first row Show all	>Lus10002399 pacid=23170834 polypeptide=Lus10002399 locus=Lus10002399.g ID=Lus10002399.BGIv1.0 annot-version=v1.0 MGSHFNFSSFGNPTNSPLVRQQSSVYSLTFDELQNTWGGSIGKDFWSMNMDELLKNICTAEETSTIGVVEEASTGNLQRQGSLTLPRTLSQKTVDEVWKD FIKENSVNAAASKNDVTRPRVQLSCSNLGLNVGGIRPPPHQQQHQQSFHRSRNQPQQQQQQPLLFPKPATVPFASPVHNKVNGGRSSAAGVTVATASPAS QGSPDVLSRSDADTSSVSPVPYVFSSRGRRPNTALEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNEELERKQAEIMQMQQNQVSKSS SLCESFLLYYNSSNPSLICRCHEKGVHLDARIFYRSEFYCDFAVLGENEASMGRQAALLEEDTDGAMVESQNQLDIVSKHHVRDSTIIIAYKYLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	0	1
AT4G30780			unknown protein		Lus10035819 [exp]	1.4	0.8827
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	1.4	0.8607
					Lus10012564 [exp]	3.5	0.8279
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	3.5	0.8344
AT4G38495			unknown protein		Lus10029400 [exp]	4.9	0.8210
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	8.7	0.8280
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	14.0	0.8089
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	15.0	0.7698
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	15.2	0.8274
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	16.4	0.7755

Compare expression of checked genes

Lus10002399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.