Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33985 105 / 2e-29 Protein of unknown function (DUF1685) (.1) AT3G50350 90 / 7e-23 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G15590 77 / 2e-18 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G15610 60 / 1e-11 Protein of unknown function (DUF1685) (.1) AT1G08790 60 / 2e-11 Protein of unknown function (DUF1685) (.1) AT3G04700 58 / 1e-10 Protein of unknown function (DUF1685) (.1) AT3G04710 57 / 1e-09 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G28690 52 / 2e-08 Protein of unknown function (DUF1685) (.1) AT2G43340 45 / 6e-06 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027898 [exp] 235 / 4e-80 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 115 / 3e-33 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 105 / 3e-29 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 64 / 2e-13 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 64 / 2e-13 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 63 / 1e-12 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10005536 [exp] 46 / 1e-06 AT5G28690 119 / 3e-35 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101300 [exp] 112 / 4e-32 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 89 / 1e-22 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 81 / 1e-19 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 65 / 2e-13 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 61 / 8e-12 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 52 / 1e-08 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 49 / 3e-07 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10002400 pacid=23170839 polypeptide=Lus10002400 locus=Lus10002400.g ID=Lus10002400.BGIv1.0 annot-version=v1.0 ATGGCGACCGCCGAACAATCAAACCAAGCCGTTCCGATGACAACTCGCAGCCGGCATCAGAAGCCGGTCCTCCGGAAGATGAACTCCTGGTCGCCTGACA GCGGGACGCCTGACAGCGGGAAGGAGGACGTGTGGCGCCGCCGCAAGGGGAACCACTGCTCCTCCTGCCGCCACCTCCACCTCCGCCGTACCAATAGCAA CGTCACCGACGAGGATCTCGACGAGCTCAAGGCCTGCATAGAGCTCGGGTTCGGATTCGACCCGGACTCCCGGCCGGATCTGGATCCCAGGCTCTCTGAC GCCCTGCCGGCGCTCGGACTGTACTGTGCTGTCAACAAGCAGTATAACAGAATCCTGTCGCGGTCAGCGTCGTCGGTTTCGTCTGACGGCCGTGCCGCAG ATGACTCCTCCTCCTCTCCCGCCGTCGTGGTGGACCCCAGTGAAGATCCGGAGACGGTGAAGATGAAGCTGAGGCAGTGGGCGAGAGTGGTGGCGTGTTC AGTGAAGCAATTTGCTGGGAACTAA
AA sequence Show only first row Show all	>Lus10002400 pacid=23170839 polypeptide=Lus10002400 locus=Lus10002400.g ID=Lus10002400.BGIv1.0 annot-version=v1.0 MATAEQSNQAVPMTTRSRHQKPVLRKMNSWSPDSGTPDSGKEDVWRRRKGNHCSSCRHLHLRRTNSNVTDEDLDELKACIELGFGFDPDSRPDLDPRLSD ALPALGLYCAVNKQYNRILSRSASSVSSDGRAADDSSSSPAVVVDPSEDPETVKMKLRQWARVVACSVKQFAGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	0	1
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	3.7	0.8324
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031480 [exp]	4.8	0.7314
					Lus10005187 [exp]	5.3	0.8324
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	6.3	0.7996
					Lus10010117 [exp]	6.5	0.8324
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	7.1	0.7275
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	7.5	0.8324
					Lus10002152 [exp]	8.4	0.8324
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	8.9	0.7671
AT1G23410			Ribosomal protein S27a / Ubiqu...		Lus10013082 [exp]	8.9	0.7966

Compare expression of checked genes

Lus10002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.