Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49710 584 / 0 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1) AT3G19280 579 / 0 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G71990 69 / 2e-12 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027899 [exp] 912 / 0 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10019855 [exp] 739 / 0 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10014060 [exp] 732 / 0 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1) Lus10009440 [exp] 72 / 3e-13 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10006076 [exp] 70 / 2e-12 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101500 [exp] 653 / 0 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1) Potri.019G091200 [exp] 91 / 3e-22 AT3G19280 92 / 2e-23 fucosyltransferase 11 (.1) Potri.019G082200 [exp] 72 / 3e-13 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 68 / 6e-12 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00852 [flax] [poplar] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Lus10002401 pacid=23170832 polypeptide=Lus10002401 locus=Lus10002401.g ID=Lus10002401.BGIv1.0 annot-version=v1.0 ATGGGTGGTCTGTCAAATATAAGGAGTTCCAGGAATCCAGAAGATGGGTCGTTGATATCGTCACTGCCGGCGGCTGCGACTGGGAAGAGGAAATGGACGA AGCTTCTGCCGGTTCTCATTGCCGTCGCGGTTCTAGTCGAGATCGCGTTTCTAGGTCGTCTCGAGACGGCTAAGAATGCTGCTGCCACGGTCGACTCGTG GGCGGGTAGCTTCCGTAACCGGTCCGGTTCGAAGCGTGGGGCGCCGGTGTTGGTTGGTAGAAACGGTGTCGTTTTGAGGTCGGAAAGTTGCGAGGAGTGG TTGGAGAGGGAAGATGCTGTGGATTATTCACGGGATTTCGATGAAGTTCCCATCTTCATCGCCCCTGCTAGGGAGGACTCGAAGACTTGTCCTGTGGGGT GTAAATTCGGACACGACTCGAGCAGAACCACCCCTGATGCAATAATTGGCACACCGAATGATCCGTCTGGAGCTATCAGTGTTCACCGGTCAATGGAATC AGCTCAATATTATCCACAGAACGACGTTTCAAAGGCACGACGGTGGGGATATCATGTAGTAATGACTACGAGCCTATCCTCTGATGTCCCAGTTGGATAT TTTTCCTGGGCAGAATATGATATCATGGCACCTATGGAGCGAAAAACCGAAAAAGCCCTTGCAGCTGCCTTTATCTCAAACTGTGGTGCCCGCAACTTCC GTCTCCAAGTACTCGACGCCCTTGAAAAATTGAAGGTTCCTATCGACTCTTACGGTGCTTGCCACCGGAACCGCGATGGAAGAGTGGATAAAGTTGAGGC CTTGAAGCGCTACAAGTTTAGCTTGGCTTTCGAGAACTCGAACGAGGAGGATAGCGTTACCGAGAAGTTCTTCCAGTCTCTTGTTGCTGGGACCATTCCA GTCATCGTTGGTGCTCCAAACATTCAAGATTTTGCACCCGGTCCAGGTTCGGTACTACACATCAAGACCCTGAAAGATGTCGGGACGGTTGCAAAAACAA TGAGAGATCTATCTCATAACCATATTGCATACAACCAGTCACTAAGGTGGAAATTCAACGGCCCTTCTGATTCTTTCAAGGCTCTGGTGGATATGGCGGC AGTACATTCATCGTGCCGCCTCTGCATTCATATAGCTACTATCATCCGTGAGAAGGAAGAGAATGGTAGCCCCCGGTTCAAGAAACGCTCATGTAGGTGC ACCAGAGGTTCCGAGACCGTGCACCATTTGTTCGTAAGAGAACGAGGGAGCTTCAAATTGGAGTCTATTTACTTAAGGTCGGGGAACCTGACCGTAGATG CACTGGAAGACCGGGTGCTGGAGAAGTTCAAGTCCATTAAACATGTACCAAACTGGAAACGTGAGAGACCAGAGAGTATAAGAGGAGGTGATGACGATTA CAGAGTGTATCGAGTGTACCCAGTTGGGTTGACTCAGAGGCAAGCACTGTACTCGTTCCGGTTTACGAGTTTCGAGTTGCAGAAATACATGGAAGCAAAC CCTTGTGCAAAGTTTGAGGTGGTTTTTGTGTAG
AA sequence Show only first row Show all	>Lus10002401 pacid=23170832 polypeptide=Lus10002401 locus=Lus10002401.g ID=Lus10002401.BGIv1.0 annot-version=v1.0 MGGLSNIRSSRNPEDGSLISSLPAAATGKRKWTKLLPVLIAVAVLVEIAFLGRLETAKNAAATVDSWAGSFRNRSGSKRGAPVLVGRNGVVLRSESCEEW LEREDAVDYSRDFDEVPIFIAPAREDSKTCPVGCKFGHDSSRTTPDAIIGTPNDPSGAISVHRSMESAQYYPQNDVSKARRWGYHVVMTTSLSSDVPVGY FSWAEYDIMAPMERKTEKALAAAFISNCGARNFRLQVLDALEKLKVPIDSYGACHRNRDGRVDKVEALKRYKFSLAFENSNEEDSVTEKFFQSLVAGTIP VIVGAPNIQDFAPGPGSVLHIKTLKDVGTVAKTMRDLSHNHIAYNQSLRWKFNGPSDSFKALVDMAAVHSSCRLCIHIATIIREKEENGSPRFKKRSCRC TRGSETVHHLFVRERGSFKLESIYLRSGNLTVDALEDRVLEKFKSIKHVPNWKRERPESIRGGDDDYRVYRVYPVGLTQRQALYSFRFTSFELQKYMEAN PCAKFEVVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	0	1
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	8.8	0.9027
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	9.2	0.8827
AT2G46850			Protein kinase superfamily pro...		Lus10030181 [exp]	13.4	0.8594
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	17.9	0.8941
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	23.7	0.8871
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	25.9	0.8795
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	27.1	0.8842
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	29.6	0.8922
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	29.9	0.8867
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	37.1	0.8810

Compare expression of checked genes

Lus10002401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.