Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21430 427 / 4e-149 YUC11 Flavin-binding monooxygenase family protein (.1) AT1G48910 400 / 9e-139 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1) AT4G28720 358 / 3e-121 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04610 356 / 2e-120 YUC3 YUCCA 3 (.1) AT5G43890 350 / 2e-118 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 346 / 8e-117 YUC9 YUCCA 9 (.1) AT5G11320 342 / 3e-115 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 337 / 3e-113 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 337 / 4e-113 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT2G33230 334 / 6e-112 YUC7 YUCCA 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022851 [exp] 351 / 1e-118 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10035244 [exp] 349 / 5e-118 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 349 / 1e-117 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011093 [exp] 342 / 3e-115 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 341 / 4e-115 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 337 / 2e-113 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 336 / 5e-113 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10011274 [exp] 335 / 1e-112 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10041729 [exp] 332 / 8e-111 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186100 [exp] 469 / 7e-166 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.005G111800 [exp] 444 / 8e-156 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 431 / 9e-151 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 401 / 6e-139 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.018G036800 [exp] 355 / 5e-120 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 353 / 1e-119 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G248200 [exp] 351 / 5e-119 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 351 / 2e-118 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 343 / 2e-115 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.007G028200 [exp] 342 / 3e-115 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10002402 pacid=23170833 polypeptide=Lus10002402 locus=Lus10002402.g ID=Lus10002402.BGIv1.0 annot-version=v1.0 ATGGTTTCGCTTCTTGAAGCGGAGGAGACTACTGTCATCATTGTAGGGGCCGGACCAGCTGGTTTGGCGGTTTCTGCGTGTCTCAATATGTACACCATCC CCAACATCCTCCTTGAAAGGGAAGACTGTTGTGCGTCTCTGTGGAGGAAACGAGCTTACGACCGTCTGAAACTGCACCTGGCCAAGCAGTTTTGCGAGCT CCCTTACATGCCTTTCCCACCCAAGTCCCCAAAGTTCGTCCCGAGGCACGGGTTCCTCAACTATTTGGATGATTACGCGTCCAAATTCGAGGTAAGCCCC AAGTACATGAAGAATGTTGAAAGTGCGATTCATGATGGGGAGAGATGGAGGGTCAGAGTGAAGGATTTGTCGCAAGAGGATTGTGAAGAAGCTTACTTGG GGAAGTATCTTGTGGTTGCAACGGGTGAAAATAGTGAAGGAATTATTCCGAAAATACCCGGTTTAGAAGGATTTAATGGGGAAGTAATTCATTCAAATCA ATACCGTAATGGTGAGAGATTTAAGGGGAAGGATGTTCTTGTCGTGGGTTGCGGAAACTCAGGGATGGAGATCGCTCACGACCTGTCGAATTGTGGTGCT AAGACCTCTATAGTTATACGTAGCCCGGTTCATATACTTACCAAGGGAATCACTGACCTAGGTATGCGTCTCATGCGCTACCTGCCAGTCGGGGTCGTTG ATGGTATCATTGTTGCTAGTGCGAGGGTGAAATTTGGAGATCTGTCAAAGTACGGGATCGAACAGCCGAAACTAGGTCCATTTTCTTACAAAATGAAAAC TGGACGAACTCCAACAATCGACACTGGCACCGTTAGACAGATCAAAACAGGAAAAATTAAGGTGGTGCCAGCAATTGCAGAAATAACAGAAAGTAACATC ACGTTTGCTAATAGAAAGGCTCAACACTTTGAAGCCATCGTTTTTGCTACTGGTTATAAGAGCACCGTGCGTAATTGGCTGAAGGATGGCCACAACTTAT TCAATGAAGATGGGATGCCAATGAGGAAATTCCCAAACAACCATTGGAAAGGAAGGAATGATATCTATTGTGTTGGATTTGCTGGAAAGGGGCTTGATGG GATTTCCAAAGATGCGATTAAAGTGGCTACTCATATTAAGAAGAAGATCAATCATGAACTAATCCATTTCTAA
AA sequence Show only first row Show all	>Lus10002402 pacid=23170833 polypeptide=Lus10002402 locus=Lus10002402.g ID=Lus10002402.BGIv1.0 annot-version=v1.0 MVSLLEAEETTVIIVGAGPAGLAVSACLNMYTIPNILLEREDCCASLWRKRAYDRLKLHLAKQFCELPYMPFPPKSPKFVPRHGFLNYLDDYASKFEVSP KYMKNVESAIHDGERWRVRVKDLSQEDCEEAYLGKYLVVATGENSEGIIPKIPGLEGFNGEVIHSNQYRNGERFKGKDVLVVGCGNSGMEIAHDLSNCGA KTSIVIRSPVHILTKGITDLGMRLMRYLPVGVVDGIIVASARVKFGDLSKYGIEQPKLGPFSYKMKTGRTPTIDTGTVRQIKTGKIKVVPAIAEITESNI TFANRKAQHFEAIVFATGYKSTVRNWLKDGHNLFNEDGMPMRKFPNNHWKGRNDIYCVGFAGKGLDGISKDAIKVATHIKKKINHELIHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10002402 [exp]	0	1

Compare expression of checked genes

Lus10002402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.