Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 508 / 0 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 497 / 7e-179 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027900 [exp] 619 / 0 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10019857 [exp] 471 / 8e-169 AT3G15460 444 / 4e-158 Ribosomal RNA processing Brix domain protein (.1) Lus10014058 [exp] 470 / 4e-168 AT3G15460 442 / 3e-157 Ribosomal RNA processing Brix domain protein (.1) Lus10035745 [exp] 44 / 7e-05 AT1G63780 468 / 2e-168 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122200 [exp] 521 / 0 AT3G15460 517 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Potri.001G403100 [exp] 519 / 0 AT3G15460 514 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10002403 pacid=23170827 polypeptide=Lus10002403 locus=Lus10002403.g ID=Lus10002403.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAACGGAAGCATAGCGAGACGGCGGCAGCTCCTCAGAAGAAGGAAGAAGTTGCGCCGGAGCGGCCTAAGAGAACTCTTCTCGGCTGGAAAG ACAAGGATGCTGCTGCTGCGGCTATTGATGCTGAAGATGACGATGGAGTTCATCCGTCTACTCCGGCGTTCAGGAACAAAGAGAAAGTCCTTGTCACTTG CTCTCGCCGTATCAGTTTCAGGTATAGGCACTTGATGTTGAACATGGTGTCCTTATTGCCTCACTGTAAGAAGGATAATAAGGTTGAATCGAAAAGCAGT AAAGGGGTTGCTCTCAGTGAGATGGTTGAGCTCAAGAGTTGCTCTTCCATTTTGTTTTTTGAGTGCAGGAAGCACAAAGACTTGTATTTGTGGATGGCAA AGTGCCCTAGTGGACCGTCTGTGAAATTCCTAGTTAATGCTGTGCACACCATGGAAGAGTTGAAACTTACTGGGAACCATCTAAAAGGATCACGCCCGCT TTTAACATTCTCGTCCAATTTTGACAAAGACGCCCACTGGAAGCTCGTCAAGGAAATGATTACACAGATATTTGGGGTTCCGAAAGAGCACCGGAAATCT AAGCCGTATCATGATCATGTCTTCGTTTTCTCCATTGTCGACGGCCATATCTGGTTCCGCAATTACCAGATATCAGCTCCTCACAACGAATCCGATAAAC TAGTCCGTGGAGGACTCGACAAGATGACCCTTATAGAGGTCGGTCCAAGGTTCTGTTTGAACCCTATTAAGATATTCAGTGGCAGCTTTGGCGGCCCAAC ACTCTACGAGAATCCACTCTACATATCTCCTAATCTGATACGTGCGATGGAGAAGAGGAAGACTGCTGGGAAATACGCGAAGAAGGTGAAGGCTAAGACT AGGAGGAAGGAGCATGAGTTAACCAATCAGTTGGAAGCCGATGAGTTTTCCGAGATGTGGAAGGATTAG
AA sequence Show only first row Show all	>Lus10002403 pacid=23170827 polypeptide=Lus10002403 locus=Lus10002403.g ID=Lus10002403.BGIv1.0 annot-version=v1.0 MAKKRKHSETAAAPQKKEEVAPERPKRTLLGWKDKDAAAAAIDAEDDDGVHPSTPAFRNKEKVLVTCSRRISFRYRHLMLNMVSLLPHCKKDNKVESKSS KGVALSEMVELKSCSSILFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDAHWKLVKEMITQIFGVPKEHRKS KPYHDHVFVFSIVDGHIWFRNYQISAPHNESDKLVRGGLDKMTLIEVGPRFCLNPIKIFSGSFGGPTLYENPLYISPNLIRAMEKRKTAGKYAKKVKAKT RRKEHELTNQLEADEFSEMWKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	0	1
AT2G40430			unknown protein		Lus10011462 [exp]	2.0	0.9350
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	2.4	0.9378
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	3.0	0.9414
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	5.5	0.9363
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10037991 [exp]	5.5	0.9134
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	5.9	0.9309
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	6.1	0.8990
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	7.2	0.9145
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	7.5	0.9248
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	7.7	0.9030

Compare expression of checked genes

Lus10002403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.